Fitness data for BPHYT_RS04590 in Burkholderia phytofirmans PsJN

virulence protein SciE type
SEED: Protein of avirulence locus ImpE
KEGG: type VI secretion system protein ImpE

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
supernatant control Vogels_fungal_media; pH 5.5 -0.7 -2.2 compare
phage PHYTO3 MOI 0.1 -0.6 -2.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.6 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.6 -2.2 compare
phage 36hr PHYTO9 MOI 1 -0.6 -2.4 compare
phage 36hr PHYTO7 MOI 0.1 -0.5 -1.8 compare
carbon source Suberic (C) -0.5 -2.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -2.1 compare
lb LB -0.4 -2.0 compare
nitrogen source Uridine (N) -0.4 -1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.4 -1.2 compare
nutrient casaminos -0.4 -2.1 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.4 +1.8 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 +1.6 compare
stress Nickel (II) chloride 0.5 mM +0.5 +2.8 compare
phage 36hr PHYTO4 MOI 1 +0.5 +1.6 compare
phage P. phyto PHYTO2 MOI 1 +0.5 +1.8 compare
phage 36hr PHYTO11 MOI 0.1 +0.6 +2.1 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.7 +1.6 compare