Fitness data for BPHYT_RS04540 in Burkholderia phytofirmans PsJN

type VI secretion protein VasK
SEED: IcmF-related protein
KEGG: type VI secretion system protein ImpL

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source Disodium Glutarate (C) -0.4 -2.2 compare
phage 36hr PHYTO2 MOI 1 -0.4 -1.3 compare
phage 36hr PHYTO7 MOI 1 -0.4 -1.9 compare
phage 24hr PHYTO4 MOI 10 -0.4 -1.9 compare
nophagecontrol 24hr Phyto Lib Only -0.4 -2.1 compare
carbon source Suberic (C) -0.4 -2.0 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.4 -1.7 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.4 -2.0 compare
nitrogen source L-Proline (N) -0.3 -1.6 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.3 +1.2 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.4 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.4 +1.3 compare
supernatant control Vogels_fungal_media 0.1X +0.4 +1.8 compare
temperature LB, 37C +0.4 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.5 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.5 +2.3 compare
motility outer cut, LB soft agar motility assay +0.6 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +1.6 compare