Fitness data for BPHYT_RS04295 in Burkholderia phytofirmans PsJN

ABC transporter
SEED: O-antigen export system permease protein RfbD
KEGG: lipopolysaccharide transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage 24hr PHYTO1 MOI 1 -0.6 -3.8 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.6 -2.3 compare
phage 36hr PHYTO1 MOI 10 -0.5 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.9 compare
nitrogen source L-Lysine (N) -0.5 -2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.3 compare
phage 24hr PHYTO6 MOI 1 -0.5 -2.4 compare
phage 24hr PHYTO3 MOI 0.1 -0.4 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.4 -2.2 compare
phage 24hr PHYTO11 MOI 0.1 -0.4 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -1.8 compare
carbon source Malonic (C) -0.4 -1.6 compare
phage 24hr PHYTO1 MOI 10 -0.4 -1.3 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.4 +1.3 compare
phage 24hr PHYTO7 MOI 10 +0.4 +1.5 compare
phage 36hr PHYTO8 MOI 10 +0.4 +2.3 compare
phage P. phyto corn MOI 1 +0.5 +2.1 compare
phage P. phyto PHYTO2 MOI 1 +0.5 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.6 +2.5 compare