Fitness data for BPHYT_RS00765 in Burkholderia phytofirmans PsJN

lytic transglycosylase
SEED: Bores hole in peptidoglycan layer allowing type IV secretion complex assembly to occur (VirB1)
KEGG: type IV secretion system protein VirB1

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. phyto PHYTO2 MOI 1 -0.6 -2.3 compare
carbon source L-Fucose (C) -0.6 -2.2 compare
phage 24hr PHYTO6 MOI 1 -0.6 -2.7 compare
phage PHYTO3 MOI 0.1 -0.5 -2.0 compare
carbon source L-Arabinose (C) -0.4 -2.4 compare
phage 24hr PHYTO10 MOI 1 -0.4 -2.0 compare
motility outer cut, LB soft agar motility assay -0.4 -2.2 compare
phage P. phyto PHYTO2 MOI 1 -0.4 -1.4 compare
motility inner cut, LB soft agar motility assay -0.4 -2.3 compare
carbon source 2-Deoxy-D-Ribose (C) -0.4 -1.8 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.4 -1.2 compare
phage 24hr PHYTO2 MOI 0.1 -0.4 -1.3 compare
temperature LB, 37C -0.4 -1.2 compare
phage 24hr PHYTO6 MOI 0.1 -0.4 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -1.4 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.7 compare
phage 36hr PHYTO11 MOI 0.1 +0.4 +1.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.2 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.5 +1.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.5 +2.6 compare