Fitness data for ABZR87_RS20230 in Ralstonia sp. UNC404CL21Col

Hcp family type VI secretion system effector
SEED: Uncharacterized protein ImpD
KEGG: type VI secretion system secreted protein Hcp

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
rhizosphere rhizosphere sample 3; outgrowth in LB -1.2 -2.0 compare
nitrogen source nitrogen source nitrite 0.5mM -1.0 -2.9 compare
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 -2.5 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -2.4 compare
carbon source 4-Hydroxybenzoic Acid (C) -0.6 -1.5 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -2.1 compare
carbon source Carbon source D-Glucose 10 mM -0.6 -2.2 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -1.2 compare
carbon source adipate (C) +0.5 +1.5 compare
soil soil EcoFAB sample 1; outgrowth in LB +0.5 +1.2 compare
carbon source butyrate (C) +0.5 +1.6 compare
carbon source Octanoic (C) +0.5 +1.1 compare
carbon source Lauric (C) +0.5 +2.1 compare
carbon source Lauric (C) +0.6 +2.2 compare
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.6 +2.3 compare
carbon source Heptanoic (C) +0.7 +2.7 compare
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.7 +2.8 compare
carbon source succinate (C) +0.7 +2.5 compare
carbon source Heptanoic (C) +0.7 +3.3 compare
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +1.7 +1.4 compare