Fitness data for ABZR87_RS19255 in Ralstonia sp. UNC404CL21Col

type III secretion system export apparatus subunit SctR
SEED: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)
KEGG: type III secretion protein SctR

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
rhizosphere rhizosphere sample 2; outgrowth in LB -1.0 -2.5 compare
carbon source Azelaic (C) -0.7 -1.9 compare
carbon source 3-Hydroxypropionate (C) -0.7 -3.2 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -2.4 compare
control NoPredeControl -0.6 -2.6 compare
root root sample 4; outgrowth in LB -0.6 -1.8 compare
carbon source butyrate (C) -0.6 -1.6 compare
rhizosphere rhizosphere sample 5; outgrowth in LB -0.5 -1.9 compare
carbon source 4-Hydroxybenzoic Acid (C) -0.5 -0.9 compare
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.5 -1.5 compare
carbon source acetate (C) -0.5 -2.1 compare
carbon source propionate (C) -0.5 -1.4 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -1.4 compare
nitrogen source nitrogen source nitrite 5mM +0.4 +1.7 compare
root root sample 5; outgrowth in LB +0.5 +1.5 compare
rhizosphere rhizosphere sample 3; outgrowth in LB +0.5 +1.2 compare
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.5 +1.2 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +1.2 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +1.0 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 +1.2 compare