Fitness data for ABZR87_RS09930 in Ralstonia sp. UNC404CL21Col

polyhydroxyalkanoate depolymerase
SEED: Intracellular PHB depolymerase (EC 3.1.1.-)
KEGG: poly(3-hydroxybutyrate) depolymerase

All 129 fitness values, sorted by group and condition


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group condition fitness t score  
carbon source 1,2-Propanediol (C) -0.1 -0.6 compare
3-Hydroxypropionate (C) -0.1 -1.2 compare
4-Hydroxybenzoic Acid (C) -0.4 -2.2 compare
Azelaic (C) -1.4 -5.4 compare
Beta-alanine (C) -0.2 -2.0 compare
Beta-alanine (C) -0.3 -2.5 compare
D-Galactose (C) -0.3 -2.2 compare
D-Galactose (C) -0.3 -2.6 compare
Carbon source D-Glucose 10 mM -0.1 -0.7 compare
Carbon source D-Glucose 10 mM +0.1 +0.9 compare
D-Glucose (C) -0.5 -4.2 compare
D-Glucose (C) -0.5 -4.0 compare
D-Glucose (C) -0.1 -1.1 compare
D-Glucose (C) -0.3 -2.2 compare
D-Xylose (C) -0.1 -0.8 compare
D-Xylose (C) -0.0 -0.3 compare
D-Xylose (C) -0.2 -1.8 compare
Disodium Glutarate (C) -0.2 -1.3 compare
Disodium Glutarate (C) -0.1 -0.9 compare
Dodecandioic (C) -1.4 -10.1 compare
Dodecandioic (C) -1.1 -7.2 compare
Glycerol (C) -0.2 -1.7 compare
Glycerol (C) -0.1 -0.7 compare
Heptanoic (C) -0.6 -4.3 compare
Heptanoic (C) -0.9 -6.8 compare
Hexanoic (C) -0.5 -3.7 compare
Hexanoic (C) -0.3 -2.4 compare
L-Glutamic (C) -0.0 -0.1 compare
Lauric (C) -0.2 -1.4 compare
Lauric (C) -1.1 -8.3 compare
Lauric (C) -0.2 -1.4 compare
Octanoic (C) -0.5 -3.2 compare
Octanoic (C) -0.5 -2.7 compare
Pimelic (C) -0.1 -0.6 compare
Pimelic (C) -0.1 -0.9 compare
Pimelic (C) -0.4 -3.0 compare
Pimelic (C) -0.2 -1.9 compare
Protocatechuic Acid (C) -1.3 -9.6 compare
Protocatechuic Acid (C) -0.7 -4.1 compare
Protocatechuic Acid (C) -0.1 -1.1 compare
Protocatechuic Acid (C) -0.1 -1.0 compare
Protocatechuic Acid (C) -0.3 -2.2 compare
Sebacic (C) -0.2 -1.1 compare
Sebacic (C) -1.6 -10.6 compare
acetate (C) -0.2 -1.4 compare
acetate (C) -0.2 -1.7 compare
adipate (C) -0.2 -1.8 compare
adipate (C) -0.2 -2.0 compare
butyrate (C) -1.2 -7.3 compare
butyrate (C) -0.8 -6.4 compare
propionate (C) -0.5 -4.1 compare
propionate (C) -0.5 -3.6 compare
propionate (C) -0.2 -1.2 compare
propionate (C) -0.1 -0.8 compare
succinate (C) -0.4 -3.5 compare
succinate (C) -0.3 -2.6 compare
Suberic (C) -0.2 -1.5 compare
Trans-2-methyl-2-butenoic (C) -0.1 -1.1 compare
Trans-2-methyl-2-butenoic (C) -0.2 -1.3 compare
Valeric (C) -0.1 -1.1 compare
Valeric (C) -0.1 -0.7 compare
control NoPredeControl -0.1 -0.7 compare
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.2 -1.7 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +1.0 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +1.3 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.9 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +1.5 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.7 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.8 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.3 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +1.2 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -2.3 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.4 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.3 -1.9 compare
Acanthamoeba sp., muxed culture-2 -0.4 -3.0 compare
C.elegans, mixed culture-1 -0.6 -4.1 compare
C.elegans, mixed culture-2 -0.6 -4.2 compare
Dictyostellum sp.mixed culture-1 -0.4 -3.2 compare
Dictyostellum sp.mixed culture-2 -0.8 -5.9 compare
nitrogen source nitrogen source Ammonium chloride 20mM -0.1 -0.7 compare
nitrogen source Ammonium chloride 20mM -0.1 -1.0 compare
nitrogen source nitrate 5mM -0.4 -2.3 compare
nitrogen source nitrate 5mM -0.0 -0.2 compare
nitrogen source nitrate 20mM +0.1 +0.5 compare
nitrogen source nitrate 20mM -0.1 -0.7 compare
nitrogen source nitrite 0.5mM -0.1 -0.5 compare
nitrogen source nitrite 0.5mM -0.1 -0.5 compare
nitrogen source nitrite 1mM -0.0 -0.3 compare
nitrogen source nitrite 5mM +0.1 +0.9 compare
nitrogen source nitrite 5mM +0.0 +0.4 compare
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.8 compare
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.0 +0.2 compare
no_plant_rhizosphere sample 2; outgrowth in LB -0.1 -0.6 compare
no_plant_rhizosphere sample 3; outgrowth in LB -0.2 -1.1 compare
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.2 +1.7 compare
no_plant_soil sample 2; outgrowth in LB +0.2 +1.4 compare
no_plant_soil sample 3; outgrowth in LB +0.4 +3.4 compare
phage Ra1_0.1 -0.1 -1.1 compare
Ra1_0.01 -0.1 -0.6 compare
Ra3_1 +0.1 +1.2 compare
Ra3_0.1 -0.1 -0.8 compare
Ra3_0.01 +0.0 +0.3 compare
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.7 -2.6 compare
rhizosphere EcoFAB sample 2; outgrowth in LB -0.2 -1.6 compare
rhizosphere sample 1; outgrowth in LB -0.4 -3.0 compare
rhizosphere sample 2; outgrowth in LB -0.7 -4.0 compare
rhizosphere sample 3; outgrowth in LB -0.2 -1.0 compare
rhizosphere sample 4; outgrowth in LB -0.5 -3.6 compare
rhizosphere sample 5; outgrowth in LB -0.6 -4.0 compare
rhizosphere sample 6; outgrowth in LB -0.3 -2.2 compare
rhizosphere sample 7; outgrowth in LB -0.9 -5.5 compare
rhizosphere sample 8; outgrowth in LB -0.2 -1.4 compare
rhizosphere sample 9; outgrowth in LB -0.1 -0.6 compare
root root EcoFAB sample 1; outgrowth in LB -0.6 -3.7 compare
root EcoFAB sample 2; outgrowth in LB +0.0 +0.2 compare
root sample 4; outgrowth in LB -0.4 -2.8 compare
root sample 5; outgrowth in LB -0.8 -3.7 compare
root sample 6; outgrowth in LB -0.6 -2.7 compare
soil soil EcoFAB sample 1; outgrowth in LB -0.7 -2.6 compare
soil EcoFAB sample 2; outgrowth in LB -0.4 -2.3 compare
soil sample 1; outgrowth in LB -0.1 -0.6 compare
soil sample 2; outgrowth in LB -0.2 -1.9 compare
soil sample 3; outgrowth in LB +0.1 +0.9 compare
soil sample 4; outgrowth in LB +0.2 +1.3 compare
soil sample 5; outgrowth in LB -0.5 -3.3 compare
soil sample 6; outgrowth in LB +0.0 +0.0 compare
soil sample 7; outgrowth in LB -0.1 -0.5 compare
soil sample 8; outgrowth in LB +0.2 +1.6 compare
soil sample 9; outgrowth in LB -0.1 -0.4 compare