Fitness data for ABZR87_RS08115 in Ralstonia sp. UNC404CL21Col

DNA ligase D
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
KEGG: DNA ligase (ATP)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.6 -1.5 compare
root root EcoFAB sample 1; outgrowth in LB -0.4 -1.9 compare
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.3 -1.7 compare
carbon source Octanoic (C) -0.3 -0.8 compare
carbon source Glycerol (C) -0.3 -1.9 compare
carbon source 4-Hydroxybenzoic Acid (C) -0.3 -0.8 compare
carbon source propionate (C) -0.3 -1.9 compare
nitrogen source nitrogen source nitrite 5mM -0.3 -1.6 compare
carbon source Pimelic (C) -0.3 -1.6 compare
nitrogen source nitrogen source nitrite 0.5mM -0.2 -1.2 compare
soil soil sample 9; outgrowth in LB -0.2 -1.5 compare
root root EcoFAB sample 2; outgrowth in LB -0.2 -1.1 compare
carbon source Disodium Glutarate (C) -0.2 -1.4 compare
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.2 -1.6 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.9 compare
carbon source Sebacic (C) +0.3 +0.9 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +1.2 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +1.2 compare
root root sample 4; outgrowth in LB +0.3 +1.8 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +1.4 compare