Fitness data for ABZR87_RS06855 in Ralstonia sp. UNC404CL21Col

RNA polymerase sigma factor RpoH
SEED: RNA polymerase sigma factor RpoH
KEGG: RNA polymerase sigma-32 factor

All 129 fitness values, sorted by group and condition


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group condition fitness t score  
carbon source 1,2-Propanediol (C) -0.5 -1.6 compare
3-Hydroxypropionate (C) -0.4 -1.6 compare
4-Hydroxybenzoic Acid (C) +0.5 +1.2 compare
Azelaic (C) -0.4 -0.8 compare
Beta-alanine (C) -1.0 -3.3 compare
Beta-alanine (C) -0.5 -2.1 compare
D-Galactose (C) -0.4 -1.2 compare
D-Galactose (C) -0.3 -1.6 compare
Carbon source D-Glucose 10 mM -0.2 -0.6 compare
Carbon source D-Glucose 10 mM -0.8 -2.9 compare
D-Glucose (C) -0.3 -1.4 compare
D-Glucose (C) +0.4 +1.1 compare
D-Glucose (C) -0.1 -0.3 compare
D-Glucose (C) -0.4 -1.7 compare
D-Xylose (C) -0.9 -2.4 compare
D-Xylose (C) -1.0 -3.5 compare
D-Xylose (C) -1.0 -4.5 compare
Disodium Glutarate (C) -0.4 -1.0 compare
Disodium Glutarate (C) -0.0 -0.1 compare
Dodecandioic (C) -0.8 -2.0 compare
Dodecandioic (C) -0.8 -2.1 compare
Glycerol (C) -0.4 -1.0 compare
Glycerol (C) -0.6 -1.4 compare
Heptanoic (C) -0.8 -2.3 compare
Heptanoic (C) -0.9 -2.1 compare
Hexanoic (C) -0.4 -1.3 compare
Hexanoic (C) -0.4 -1.0 compare
L-Glutamic (C) -0.3 -0.8 compare
Lauric (C) +0.1 +0.2 compare
Lauric (C) -0.9 -3.3 compare
Lauric (C) +0.1 +0.2 compare
Octanoic (C) -1.0 -1.7 compare
Octanoic (C) -2.1 -4.4 compare
Pimelic (C) -0.4 -1.4 compare
Pimelic (C) -0.5 -1.4 compare
Pimelic (C) -0.3 -1.5 compare
Pimelic (C) -0.5 -1.9 compare
Protocatechuic Acid (C) -0.6 -1.9 compare
Protocatechuic Acid (C) -0.4 -1.3 compare
Protocatechuic Acid (C) -0.7 -2.0 compare
Protocatechuic Acid (C) -0.4 -1.4 compare
Protocatechuic Acid (C) -0.2 -0.6 compare
Sebacic (C) -0.2 -0.5 compare
Sebacic (C) -0.3 -1.0 compare
acetate (C) +0.1 +0.2 compare
acetate (C) -0.0 -0.1 compare
adipate (C) -0.7 -1.8 compare
adipate (C) -0.6 -1.6 compare
butyrate (C) -0.4 -1.1 compare
butyrate (C) -0.7 -2.0 compare
propionate (C) -0.1 -0.3 compare
propionate (C) -0.3 -1.3 compare
propionate (C) -0.2 -0.5 compare
propionate (C) -0.3 -1.1 compare
succinate (C) -0.1 -0.4 compare
succinate (C) -0.1 -0.4 compare
Suberic (C) +0.2 +0.6 compare
Trans-2-methyl-2-butenoic (C) -0.5 -1.9 compare
Trans-2-methyl-2-butenoic (C) -0.3 -1.3 compare
Valeric (C) +0.1 +0.2 compare
Valeric (C) +0.1 +0.6 compare
control NoPredeControl -0.2 -0.6 compare
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -1.4 -4.4 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.8 -1.7 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -2.2 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.6 -3.1 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -2.0 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 -2.1 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -1.9 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -1.2 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.7 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 -2.2 compare
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 -1.5 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.1 +0.3 compare
Acanthamoeba sp., muxed culture-2 -0.2 -0.9 compare
C.elegans, mixed culture-1 +0.1 +0.4 compare
C.elegans, mixed culture-2 -0.1 -0.4 compare
Dictyostellum sp.mixed culture-1 -0.1 -0.2 compare
Dictyostellum sp.mixed culture-2 -0.3 -0.9 compare
nitrogen source nitrogen source Ammonium chloride 20mM -0.7 -2.0 compare
nitrogen source Ammonium chloride 20mM -0.6 -1.6 compare
nitrogen source nitrate 5mM -0.3 -0.9 compare
nitrogen source nitrate 5mM -0.4 -0.8 compare
nitrogen source nitrate 20mM -0.2 -0.6 compare
nitrogen source nitrate 20mM -0.3 -0.8 compare
nitrogen source nitrite 0.5mM -0.2 -0.5 compare
nitrogen source nitrite 0.5mM -0.6 -1.0 compare
nitrogen source nitrite 1mM -0.2 -0.5 compare
nitrogen source nitrite 5mM -0.4 -1.3 compare
nitrogen source nitrite 5mM -0.1 -0.4 compare
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.2 compare
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.5 -1.4 compare
no_plant_rhizosphere sample 2; outgrowth in LB -0.6 -1.2 compare
no_plant_rhizosphere sample 3; outgrowth in LB -0.7 -1.5 compare
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.7 -1.2 compare
no_plant_soil sample 2; outgrowth in LB -0.7 -1.9 compare
no_plant_soil sample 3; outgrowth in LB -0.8 -1.5 compare
phage Ra1_0.1 +0.1 +0.3 compare
Ra1_0.01 -0.1 -0.4 compare
Ra3_1 +0.4 +1.8 compare
Ra3_0.1 +0.1 +0.3 compare
Ra3_0.01 -0.2 -0.9 compare
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -1.3 -1.6 compare
rhizosphere EcoFAB sample 2; outgrowth in LB -0.8 -1.6 compare
rhizosphere sample 1; outgrowth in LB -0.5 -1.3 compare
rhizosphere sample 2; outgrowth in LB -0.1 -0.4 compare
rhizosphere sample 3; outgrowth in LB +0.3 +0.7 compare
rhizosphere sample 4; outgrowth in LB -0.0 -0.1 compare
rhizosphere sample 5; outgrowth in LB -0.2 -0.5 compare
rhizosphere sample 6; outgrowth in LB -0.5 -1.3 compare
rhizosphere sample 7; outgrowth in LB -0.9 -1.9 compare
rhizosphere sample 8; outgrowth in LB -0.4 -0.7 compare
rhizosphere sample 9; outgrowth in LB -0.2 -0.5 compare
root root EcoFAB sample 1; outgrowth in LB -0.4 -0.6 compare
root EcoFAB sample 2; outgrowth in LB -1.1 -2.1 compare
root sample 4; outgrowth in LB -1.1 -1.8 compare
root sample 5; outgrowth in LB -0.6 -1.1 compare
root sample 6; outgrowth in LB -0.4 -0.7 compare
soil soil EcoFAB sample 1; outgrowth in LB -0.9 -1.1 compare
soil EcoFAB sample 2; outgrowth in LB -0.4 -0.7 compare
soil sample 1; outgrowth in LB -1.2 -2.4 compare
soil sample 2; outgrowth in LB -0.7 -1.5 compare
soil sample 3; outgrowth in LB +0.1 +0.1 compare
soil sample 4; outgrowth in LB -0.6 -1.3 compare
soil sample 5; outgrowth in LB -1.2 -2.4 compare
soil sample 6; outgrowth in LB -1.4 -3.3 compare
soil sample 7; outgrowth in LB -1.1 -2.3 compare
soil sample 8; outgrowth in LB -0.7 -1.4 compare
soil sample 9; outgrowth in LB -1.4 -3.0 compare