Fitness data for BT4187 in Bacteroides thetaiotaomicron VPI-5482

exo-alpha-D-galacturonosidase for catabolism of rhamnogalacturonan I and polygalacturonate (from data)
Original annotation: exo-poly-alpha-D-galacturonosidase precursor (NCBI ptt file)
SEED: Polygalacturonase (EC 3.2.1.15)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.4)


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group condition fitness t score  
mouse_coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -4.2 -14.9 compare
mouse_coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -3.1 -12.2 compare
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -2.9 -10.5 compare
mouse Post-colonization (Day 7) - Cage1C;Mouse1 -2.9 -7.6 compare
mouse Post-dosage t1 (Day 1) - Cage1C;Mouse1 -2.8 -6.2 compare
mouse; methotrexate Stool_Day6_Mouse7 +2.4 +13.1 compare
mouse; methotrexate Stool_Day7_Mouse7 +2.5 +12.7 compare
mouse; methotrexate Stool_Day10_Mouse9 +2.5 +11.9 compare
mouse; methotrexate Stool_Day3_Mouse10 +2.5 +14.3 compare
mouse; methotrexate Stool_Day3_Mouse9 +2.5 +13.9 compare
mouse; methotrexate Stool_Day4_Mouse9 +2.7 +14.6 compare
mouse; methotrexate Stool_Day5_Mouse9 +2.7 +14.0 compare
mouse; methotrexate Stool_Day6_Mouse9 +2.8 +13.4 compare
mouse; methotrexate Stool_Day4_Mouse10 +2.8 +16.3 compare
mouse; methotrexate Stool_Day7_Mouse9 +2.9 +13.2 compare
mouse; methotrexate Stool_Day10_Mouse10 +2.9 +13.8 compare
mouse; methotrexate Stool_Day5_Mouse10 +2.9 +16.0 compare
mouse; methotrexate Stool_Day8_Mouse10 +3.0 +14.8 compare
mouse; methotrexate Stool_Day6_Mouse10 +3.1 +15.6 compare
mouse; methotrexate Stool_Day7_Mouse10 +3.3 +17.1 compare