Fitness data for BT1572 in Bacteroides thetaiotaomicron VPI-5482

RNA polymerase ECF-type sigma factor (NCBI ptt file)
SEED: RNA polymerase ECF-type sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
mouse; vehicle Stool_Day7_Mouse3 -1.4 -2.8 compare
mouse Post-colonization (Day 4) - Cage1A;Mouse2 -1.2 -4.0 compare
mouse; methotrexate Stool_Day12_Mouse8 -1.2 -2.0 compare
mouse; vehicle Stool_Day6_Mouse1 -1.0 -2.5 compare
mouse; vehicle Stool_Day10_Mouse1 -1.0 -1.9 compare
mouse; zymosan and methotrexate Stool_Day8_Mouse16 -1.0 -1.9 compare
mouse; zymosan and vehicle Stool_Day7_Mouse11 -0.9 -2.0 compare
mouse_post_colonization Post-colonization (Day 3) - Cage6;Mouse2 -0.9 -3.4 compare
mouse_coculture cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.9 -3.1 compare
carbon source D-Trehalose 20mM (C) -0.9 -2.5 compare
mouse_post_colonization Post-colonization (Day 1) - Cage2;Mouse2 -0.9 -2.6 compare
mouse; vehicle Stool_Day10_Mouse3 -0.9 -2.0 compare
mouse; zymosan and vehicle Stool_Day5_Mouse11 -0.9 -2.5 compare
mouse_peg_treatment PEG (Day 6) - Cage5;Mouse3 -0.9 -3.0 compare
carbon source Levan - from Erwinia herbicola (C) -0.9 -3.2 compare
mouse_coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.9 -2.3 compare
mouse; vehicle Stool_Day5_Mouse2 -0.9 -2.4 compare
mouse Post-colonization (Day 7) - Cage1B;Mouse5 -0.9 -1.8 compare
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 +0.8 +1.9 compare
phage SJC12_cps8_0.1MOI +1.0 +3.1 compare