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  • Fitness data for BT1455 in Bacteroides thetaiotaomicron VPI-5482

    protein rtcB (NCBI ptt file)
    SEED: RNA-2',3'-PO4:RNA-5'-OH ligase

    Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.1)


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    group condition fitness t score  
    phage SJC16_cps8_1MOI -2.2 -3.6 compare
    control NoPhage -1.7 -3.1 compare
    carbon source D-Glucose (C) -1.6 -3.7 compare
    stress BHIS with Trimethoprim 0.0125 mM -1.5 -2.4 compare
    stress BHIS with Rifampicin 0.000048828125 mM -1.5 -2.2 compare
    stress BHIS with DAMPA 60 uM -1.4 -2.2 compare
    carbon source D-Glucose 20mM (C) -1.4 -2.8 compare
    survival aerobic shaking 48 hr copy A -1.4 -1.6 compare
    stress BHIS with 5-Fluorouracil 0.1 mM -1.3 -2.6 compare
    mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -1.2 -1.7 compare
    stress Bile salts 0.5 mg/ml -1.2 -1.8 compare
    carbon source D-Galacturonic Acid (C) -1.2 -2.6 compare
    stress Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM -1.2 -1.6 compare
    control NoPhage -1.2 -2.8 compare
    stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml -1.1 -3.0 compare
    carbon source Maltotetraose (C) +1.1 +3.3 compare
    mouse_coculture cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 +1.1 +2.9 compare
    mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse2 +1.3 +4.5 compare
    carbon source a-Cyclodextrin 2.5 mg/ml (C) +1.3 +3.0 compare
    nitrogen source Cytidine (N) +1.5 +4.8 compare