Pairwise Alignments

Query, 419 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Rhodanobacter sp. FW510-T8

Subject, 371 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  178 bits (452), Expect = 2e-49
 Identities = 122/359 (33%), Positives = 192/359 (53%), Gaps = 42/359 (11%)

Query: 13  APALRRPSVAVQIGKVKVGGGAPVVVQSMTNTDTEDPASTAKQIAELARAGSELVRITVN 72
           +P +RRPS  + +G V +G GAP+ VQSMTNT T D  +T  QI  L   G+++VR++V 
Sbjct: 5   SPIIRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVEATVAQIRALENVGADIVRVSVP 64

Query: 73  TPAAAAAVPRIAERLAMMGVDVPIVGDFHYNGHQLLEREPACAEALAKYRINPGNVGFGK 132
           T  AA A   I ++       VP+V D H++    L+      + L   RINPGN+G   
Sbjct: 65  TMDAAEAFKVIKQQ-----TKVPLVADIHFDYRIALKVAEYGVDCL---RINPGNIG--- 113

Query: 133 KRDSQFGAIIEKAIQYGKPVRIGANWGSLDQGMLTALMDENAHRADPWDASHVAREALIR 192
             + +  +++E A     P+RIG N GSL++ ++    +                +AL+ 
Sbjct: 114 -NEERIRSVVECARDKNIPIRIGVNGGSLEKDLMDKYKEPTP-------------QALLE 159

Query: 193 SALDSAALAEKIGLPRERIILSCKVSGVQELIAVYRDLAARCDYALHLGLTEAGMGSKGI 252
           SA+    + +++   + ++  S K S V   +  YR LA +    LHLG+TEAG    G 
Sbjct: 160 SAMRHVDILDRLNFDQFKV--SVKASDVFLAVESYRLLAKQIKQPLHLGITEAGGARAGA 217

Query: 253 TASSAALAVLLQEGIGDTIRISLTPEPGASRTGEVIVAQELLQTMGLRSFTPLVTACPGC 312
             S+  L +LL EGIGDT+RISL  +P      E+ V  ++L+++ +RS      ACP C
Sbjct: 218 VKSAVGLGMLLAEGIGDTLRISLAADP----VEEIKVGFDILKSLRIRSRGINFIACPSC 273

Query: 313 GRTTSEFFQELAKTVQEHVREQMPVWRIKYDGVENLTLAVMGCIVNGPGESKHANIGIS 371
            R   EF  ++  TV E  R      R++ D V  + ++++GC+VNGPGE+  ++IG++
Sbjct: 274 SR--QEF--DVIATVNELER------RLE-DVVTPMDVSIIGCVVNGPGEALVSDIGLT 321