Pairwise Alignments

Query, 332 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase from Rhodanobacter sp. FW510-T8

Subject, 323 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  140 bits (352), Expect = 6e-38
 Identities = 102/307 (33%), Positives = 161/307 (52%), Gaps = 27/307 (8%)

Query: 17  EIGPERDGQRIDNALVTLLKGVPKSMIYRLLRTGQVRVNGK-RAKPDTRLVEGDTLRIPP 75
           EI   + GQR+D  L  L     ++ I   ++ G V V+G  + KP  +++EG  + I  
Sbjct: 10  EITATQTGQRLDQTLAELFPDYSRTRIKEWIQAGAVYVDGMVQTKPREKVLEGQEIEIEA 69

Query: 76  VRVAERPEREGPPTGQVAEVADA-VIFEDKHFLVIDKPAGVASHGGSGVSHGAI-ELLRA 133
             + E  + E       A+  D  +++ED H +VI+K AG+  H G+G S G +   L  
Sbjct: 70  T-LKEEIKAE-------AQAIDLDIVYEDDHIIVINKQAGLVVHPGAGNSDGTLMNALLH 121

Query: 134 ARPQEHLE----LVHRLDRDTSGVLVFARTRAGLTGLQAAIRAGEVTKQYLCLMLGHPSK 189
             P+  L     +VHRLD+DT+G++V A+T    T L AA++A E+T++Y  ++ G  + 
Sbjct: 122 HCPEIELVPRAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVSGTMTA 181

Query: 190 AKFDVNAPLLKSVMQGGERMVRVSDNGKPSLTFFREMEQYPSARLMQATLGTGRTHQIRV 249
               V+ P+ +   +     + V  +G+PS+T +R  E++ +   ++  L TGRTHQIRV
Sbjct: 182 GGV-VDEPIARHPTK--RTHMAVHHSGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQIRV 238

Query: 250 HAAHIGHPLAGDPKYGDREM--NKRYREM-----GLNRMFLHA--SHMSFDLDGRSYSFS 300
           H AHIGH L GDP YG R     K   E+     G  R  LHA    ++        S+ 
Sbjct: 239 HMAHIGHILVGDPVYGGRPRPPKKATPELMEALNGFKRQALHAVRLELAHPFTCEIMSWQ 298

Query: 301 APLPDDL 307
           AP+P+D+
Sbjct: 299 APIPEDM 305