Pairwise Alignments

Query, 246 a.a., flagellar motor protein from Rhodanobacter sp. FW510-T8

Subject, 255 a.a., flagellar motor protein PomA (RefSeq) from Shewanella loihica PV-4

 Score =  142 bits (358), Expect = 6e-39
 Identities = 77/246 (31%), Positives = 142/246 (57%), Gaps = 5/246 (2%)

Query: 1   MDLVSIVGTILAFLVIIVGTVLKGSNIGALWNAAAFVIVFLGTLSALLVQTQGKVLRHAL 60
           MDL +++G I AF   I+G ++    I    +  + +IV +G+L  ++++   K    A+
Sbjct: 1   MDLATLIGLIGAF-GFIIGAMVSSGGIAIFVDVPSVLIVMIGSLFVVMMKFNLKQFLGAV 59

Query: 61  KMMAMVYRPPLHRPDDLISRIVGWSEISRRQGLLGLEPQIEAE-PDPFVSKGLQLLVDGG 119
           K+ A  +   + +PD+LI + V  ++ +R+ G L LE   EAE  + F+ K + +LVDG 
Sbjct: 60  KIAAKAFMFKIDKPDELIEQSVTMADAARKGGFLALE---EAEISNSFMQKAVDMLVDGH 116

Query: 120 EPEAIRSVLEVDLETREAIDLAGAKVYEMAGIYSPTLGIIGAVMGLMAVMQNLADPSKLG 179
           + E +R  LE D+   E     G  +++  G  +P +G+IG ++GL+A++ N+ DP  +G
Sbjct: 117 DGEVVREALEKDIALTEERHKTGISIFKALGDVAPAMGMIGTLIGLVAMLSNMDDPKSIG 176

Query: 180 HGIAAAFVATIYGVALANLFMLPMAARLKGLISKQTQMREILIEGLVSIAQGDNPRQIEA 239
             +A A + T+YG  +AN+  LP+A +L   + ++   R ++++ +++I  G NPR IE 
Sbjct: 177 PAMAVALLTTLYGAIIANMIALPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQNPRVIEG 236

Query: 240 RLQGYV 245
            L+ Y+
Sbjct: 237 FLKNYL 242