Pairwise Alignments

Query, 830 a.a., GGDEF and EAL domain-containing protein from Rhodanobacter sp000427505 FW510-R12

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  334 bits (856), Expect = 2e-95
 Identities = 206/567 (36%), Positives = 318/567 (56%), Gaps = 13/567 (2%)

Query: 253 DISQRKAFEDALHRERELAEVTLRSIGDAVITTDPQLCITSLNPIAEAMTGWSGLEAQGR 312
           DI++ K  E++L    +L+ +   +  +A+   D    I ++N     +TG+S  E +G+
Sbjct: 435 DITEAKLIEESL----KLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQ 490

Query: 313 PIEEIFQLFDARSGHAVANPLRAAISHNTIVDLAGRTLLRHRHGFDTPVEDSSAPIHDNA 372
            I     ++   +GH     +   I +    +  G    R R+  +  +  +   I D  
Sbjct: 491 HIR---MMYCDLNGHEFYQQMNDDIRNKG--EWQGEMRQRRRNNEEYVIWLTINTIKDKD 545

Query: 373 GNVIGGVLVFHDVSETRALALKMIHLTQHDTLTGLPNRSQLHEHIGQAIATANRRQQRAA 432
           G     V +F D+++ +     +     +DTLTGLPNR  L E++   I TA+R +   A
Sbjct: 546 GLPHRRVALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFA 605

Query: 433 LLYADIDNFKQVNELHGHAAGDRVLRAFAAQLQRCLSGDDLLSRYGGDEFVVVLPHLESV 492
           L++ D+D FK+VN+  GHA GD +L   A++L+ C+   D+++R GGDEF VVL  +   
Sbjct: 606 LMFLDLDYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADH 665

Query: 493 GDAASLGQRLINHGEQTRVDGLAELGLRLSIGISVYPDDAIEPDGLLQHAETALVAVKAQ 552
                + + ++    +    G     +  SIGI++YPDD+   +GLL+HA+ A+ A K Q
Sbjct: 666 KGIERVAEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQ 725

Query: 553 GRHGYRFFTASMNERTQARRRIETALRQALPRHELELYYQPKVDVHSGRIVGAEALLRWQ 612
           GR+ + +FT SM E  + R R+   LRQA+   E EL+YQP V + +G ++ AEALLRW 
Sbjct: 726 GRNRFNYFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWF 785

Query: 613 ANGRELYQPDQFVPVAEDSGLILPIGAWALRRACRQARAW-QDLGHAIAVSVNVSPLQFQ 671
              R    P +F+PVAED+GLI+ IG W   +A RQ+  W + LG  I +SVN SP+QF+
Sbjct: 786 HPERGSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFR 845

Query: 672 HPE--FYHWLDEVLVESGLAPGLLELELTERMVMSGGDATTGLLQRIKRRGVRLSLDDFG 729
                 ++WL E+L +  +    + +E+TE +++      T  L   +  GV++SLDDFG
Sbjct: 846 DEGALLHNWL-ELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFG 904

Query: 730 TGYCSLSYLKHFPIDTLKIDRVFVRDLASDRDTATITSAIIAMARSLNKEVVAEGVETHA 789
           TGY SL+YLK F ID LKID+ F R++ +D +  T+  AII MA  L  +V+AEGVET A
Sbjct: 905 TGYSSLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEA 964

Query: 790 QVAFLRQAGCSQLQGFLFGAALPAAEF 816
           Q   L +AGC   QG+LF   + A+EF
Sbjct: 965 QRQVLLRAGCDYGQGYLFSKPVSASEF 991



 Score = 80.1 bits (196), Expect = 6e-19
 Identities = 37/95 (38%), Positives = 56/95 (58%)

Query: 144 FFGAFQHAAIGMALVAPDSRWLRVNAALCAMLGYREDEFLSRKTRDITHPDDVATSDMRH 203
           F   F    IG+A+   D +W++VN  LC ML Y EDE L    + +THPDD+     + 
Sbjct: 197 FRSQFNIGNIGIAITGIDQKWIKVNPRLCQMLKYSEDELLHMTWKQLTHPDDLDADVAKF 256

Query: 204 AQMLEGELESCHLEKRYFHRNGSLVHAQLSVSLVR 238
            QML G +++  L+KR+  +NGSLV+  ++V+  R
Sbjct: 257 EQMLAGNIDNYELDKRFIAKNGSLVYTHMTVACKR 291



 Score = 41.6 bits (96), Expect = 2e-07
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 20/165 (12%)

Query: 116 RVCGIFTALVDITERHDLELKLHESEQRFFGAFQHAAIGMALVAPDSRWLRVNAALCAML 175
           R+CG +T   DITE   +E  L  S       + +++  M+++  +   + VNAA   + 
Sbjct: 428 RMCGTYT---DITEAKLIEESLKLSAL----VYDNSSEAMSVLDENGVIITVNAAFTDIT 480

Query: 176 GYREDEFLSRKTR----DITHPD--DVATSDMRHAQMLEGELESCHLEKRYFHRNGSLVH 229
           GY E E   +  R    D+   +       D+R+    +GE+       R   RN     
Sbjct: 481 GYSESEIRGQHIRMMYCDLNGHEFYQQMNDDIRNKGEWQGEM-------RQRRRNNEEYV 533

Query: 230 AQLSVSLVRDDDGSPRYFVVQIQDISQRKAFEDALHRERELAEVT 274
             L+++ ++D DG P   V    DI+ +K  E  + ++     +T
Sbjct: 534 IWLTINTIKDKDGLPHRRVALFSDITDKKQSEHLIWKQANYDTLT 578