Pairwise Alignments

Query, 457 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Rhodanobacter sp000427505 FW510-R12

Subject, 439 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  179 bits (455), Expect = 1e-49
 Identities = 125/404 (30%), Positives = 199/404 (49%), Gaps = 23/404 (5%)

Query: 53  PALDIVAGEPDAATLSRFDVVVKSPGISAYKPALLAAQAQGTRFTSGTALWFGENPDAR- 111
           P + ++AG  D   L +   ++ SPGI+   P + AA   G        L+  E  D + 
Sbjct: 50  PEVKLIAGGFDCRYLVQATQIIISPGIAMNTPEVRAALDMGIEVIGDVELFAREIADRKP 109

Query: 112 -VIAVTGTKGKSTTSALIAHLARALGVRTALAGNIGLPLLELLDQRAELWVIELSSFQTG 170
            VI +TG+ GK+T + L+  + R  G+  A+ GNIG+P L+LL + A+++V+ELSSFQ  
Sbjct: 110 CVIGITGSNGKTTVTTLVGEMLREAGIAVAVGGNIGIPALDLLKENADIFVLELSSFQLE 169

Query: 171 EAGPLELGVVTSLY--EEHLDWHGSRERYVADKLKLADASRTLLVNGLQPGLLERTAAHP 228
               L     T L   E+H+D +   + Y   KL+L   SR+++ N      +     + 
Sbjct: 170 TTHSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ 229

Query: 229 RRLLFGTLEG--WHISDGFICRGAQAVFPIGQLAAPGLHNALNACAALAALEAVGMDALA 286
                   EG  W I D  I  G   + PI +++  G HN  N  AA+A + AVG+D   
Sbjct: 230 NSFGLAPPEGDEWGICDSKIYHGHSEIMPITEVSLIGSHNHANLLAAMALVYAVGVDKQV 289

Query: 287 AAPALATFRPLPHRLQPLGERNGWHWVNDSISTTPLATLAALESL--HGRTVTVLVGGHD 344
            A    TF  L HR + +G + G  +VNDS +T   AT+AAL+ L  H   + ++ GG  
Sbjct: 290 MANVARTFTGLSHRCEVVGVKGGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDG 349

Query: 345 RGLDWTPFVEAMRAVPAHAIVCMGANGARIEAALRSAEVACSILLVANLASAVEVARART 404
           +G D++P  E +  V    ++ +G +G +I A    A      + V ++A+AV  A    
Sbjct: 350 KGADFSPLEEPLTKVT--HLITLGRDGNKIAALKEGA------IKVDSMAAAVAKAAQLA 401

Query: 405 PAHGVILLSPGAPSFDQFKDYAERGRRFSALAGFDSSRIASIDG 448
            +  ++LLSP   S D + ++  RG  F        S++  +DG
Sbjct: 402 TSGDIVLLSPACASLDMYSNFMARGDDF-------RSQVEQLDG 438