Pairwise Alignments

Query, 1343 a.a., ATP-dependent RNA helicase HrpA from Rhodanobacter sp000427505 FW510-R12

Subject, 1293 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella sp. ANA-3

 Score = 1035 bits (2677), Expect = 0.0
 Identities = 576/1320 (43%), Positives = 806/1320 (61%), Gaps = 70/1320 (5%)

Query: 31   DFGRLLGRWRALSRRPDEDK----LASLRADIERSAAKRRARAVAKPPIRLDESLPISAR 86
            D  R+  R   L++  D DK    LA L    + +  K   R  A+P I+  ++LP+S  
Sbjct: 22   DASRIRRRLFKLNKEADSDKKTQELAKLAEQAQAAFEKVEQRLKARPKIQYPDNLPVSGM 81

Query: 87   GKDIVKLIREHQVVVIAGETGSGKTTQLPKLCLAAGRGEAGMIGCTQPRRLAARSVARRV 146
             ++I K I E+QVV+IAGETGSGKTTQLPK+CL  G G  G IG TQPRRLAARSVA RV
Sbjct: 82   REEIAKAISENQVVIIAGETGSGKTTQLPKICLELGLGSRGFIGHTQPRRLAARSVATRV 141

Query: 147  AEELGTPLGEVVGFQVRFNDQVSERSLIKFMTDGILLAETQGDPWLSAYDTLIIDEAHER 206
            AEEL +PLGE+VGF+VRF D +   S IK MTDGILLAE   D +L  YDT+IIDEAHER
Sbjct: 142  AEELQSPLGELVGFKVRFADALKSESYIKLMTDGILLAELTSDRYLDQYDTIIIDEAHER 201

Query: 207  SLNIDFLLGYLKRLAIKRPELKIIVTSATIDTARFAEHFDGAPVVEVEGRAYPVETRWRP 266
            SLNIDF+LGYLK++  KRP+LKII+TSATID  RF++HF+ AP++EV GR YPVETR+RP
Sbjct: 202  SLNIDFILGYLKQILKKRPDLKIIITSATIDVERFSKHFNNAPIIEVSGRTYPVETRYRP 261

Query: 267  VGGQSHFSQAKSDSDHRQGSAEHIAAVLDEITRGDPRGDVLVFLPGEREIRDAHLLLSRR 326
            +         ++D D  +G    I A +DE+   +  GD+L+F+ GEREIRD    L+RR
Sbjct: 262  L-----VQDTEADLDQIEG----IFAAVDELV-AEGLGDILIFMNGEREIRDTAEQLNRR 311

Query: 327  QYRETEIMPLYARLSAGEQDRVFKPGVKRRVVLATNVAETSLTVPRIRYVIDTGTARVKR 386
             YR+TEI+PLYARLS GEQ +VF     RR+VLATNVAETSLTVP IRYVID GTAR+ R
Sbjct: 312  NYRDTEILPLYARLSYGEQSKVFSSHTGRRIVLATNVAETSLTVPGIRYVIDPGTARISR 371

Query: 387  YSQRSQLERLHVEPISQAAADQRKGRCGRVGPGICYRLYDEADFAGRAAFTDPELLRSSL 446
            YS R++++RL +EPISQA+A+QR+GRCGRVGPGIC RLYDEADF  R AFTDPE+LR++L
Sbjct: 372  YSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNSRPAFTDPEILRTNL 431

Query: 447  ANVILRMLALKLGEVDEFPFLEAPDPRVVADGFRRLTEISAIDEGR---KLTAIGRTLAK 503
            A+VIL+MLA+ LG++  FPF+E PDPR + DGF  L E+ A+ + +    LT +GR L++
Sbjct: 432  ASVILQMLAIGLGDIAAFPFIEPPDPRHIRDGFLLLEELQAVKQQKGNIVLTPLGRQLSQ 491

Query: 504  LPIDVQLARMLVEGEQLHALRELLVIVAFLSIQDPRERPADARQQADAAHAAFADPKSDF 563
            +P+D +LARM+VE  QL  L+E+LVI A LSIQDPRERP D +Q +D AH  FADP SDF
Sbjct: 492  IPVDPRLARMVVESHQLGCLQEVLVIAAGLSIQDPRERPMDKKQASDEAHRRFADPHSDF 551

Query: 564  AGVLNLWRAYHDAHEELTQSKLRDWCSRHFLSFMRMREWRELHRQLLLVVGELGWKLDGQ 623
               +NLW+   +  +EL+ S+ R  C   +L+++R+REW++L+ QL   V +L W+L+  
Sbjct: 552  VSWVNLWQHLKEQQKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQAVHDLKWRLNET 611

Query: 624  PQAARPAPPPARRGRLGGGEAFKIKSTPPQPSPASRGGSESVDADRLYESVHRALLAGLP 683
            P                                              Y+++HRALL+GL 
Sbjct: 612  PAN--------------------------------------------YDALHRALLSGLL 627

Query: 684  TQVGRKDEKGVYQSTRERKFQLFPGSALAKAPPNWVFCAQILDVGGRVWGMMNARVEPLW 743
            + +G KD    Y   R RKF +FPGS LAK  P W+  A++ +   +++    A++EP W
Sbjct: 628  SHIGFKDNNNEYLGARNRKFFVFPGSPLAKKGPKWIMAAELTET-SKLFARCCAKIEPEW 686

Query: 744  IEQQAAHLLRTHCRDPHWSKKRGCVVAYEQVSLFGLVLVEKRPVTFQRQDPALAHAIFLR 803
            +E  AAHL++ +  +PH+  K+G V+A+E   L+GL +V +R V +   +P  A  IF+R
Sbjct: 687  LEPLAAHLIKKNHLEPHFEAKQGSVIAFENQVLYGLTVVHRRRVQYGPINPVEAREIFIR 746

Query: 804  EALVRGDIDTKVDFVRANQRVLEEAQGIEAKQRREGLIRHEDELVAFFEGKLPEEIASSR 863
             AL  G + TK  F  ANQ++LE+ + +E K RR  ++  E  L+ F+E ++PE I ++ 
Sbjct: 747  SALAEGQLQTKEAFFLANQKLLEDVEALEHKSRRRDILVDEQVLMDFYEPRIPEGIYNAP 806

Query: 864  ALDVWYRKARPAEQAALRWSLDDVMAGGAG-LDARAFPAALEIGAQRYRLEYRFVPGDEA 922
                W+++AR  +   L ++   +M   A  + A  FP     G  R +L Y F P    
Sbjct: 807  KFFSWWKEARRTQPDLLDFNKSLLMQRSADHISALDFPDTWHKGNIRLQLSYHFDPAASD 866

Query: 923  DGVTLQLPLAMLNALRLARCEWLVPGLLADKVAELIRGLPKALRRNFVPAPDFARAFVEA 982
            DGV++ +P+A+LN +     +WLV G+  +K   LI+ LPK LRRNFVPAPD+ARA V+A
Sbjct: 867  DGVSVHIPVALLNQIDDTDFDWLVAGMREEKCVALIKSLPKGLRRNFVPAPDYARACVQA 926

Query: 983  EAPRDESLVKALAAFLQRATGVELAAGDFTAVELPPHLLMRYRLHDERGRTLASGRDLAA 1042
              P   SL+ A+   L R +G  +   DF   ++P HL M +++ D++G+ +A GR L  
Sbjct: 927  MQPFSASLLDAMCKQLLRMSGTRVNPEDFDVTQMPAHLQMNFKIEDDKGKLVAQGRVLDT 986

Query: 1043 LRGQWEGPAREAFSRKTDLELTREDVASWDFEEIPAQLRSEGG---LTAFPALVDLGETV 1099
            L+ + +G   +A  +  D  + +E +  W F ++P Q     G   + AFPAL+D  ++V
Sbjct: 987  LKAELQGVVAKAIRQVADKGIEKEALTEWSFGDLPKQFEQRKGNYQVRAFPALIDNKDSV 1046

Query: 1100 ALRVFERSDEARVAHRQGVVRLLRNALASEAKQARRRLPIGHALALKYAPLGGVEGLRED 1159
            A+++F+   EA+ AHRQG+ RLL   + S  K  ++ LP    LA+ + P G V+ L +D
Sbjct: 1047 AIKLFDDEFEAQTAHRQGLRRLLLLNIPSPVKHLQQALPNKAKLAMYFNPFGQVQILIDD 1106

Query: 1160 LLEGGFADLLQRHELDVRTAGAFESLRTQCARELFGAGVERLKLAEPIIEAQADLKPWLQ 1219
            ++      LL    LDVR A  FE  +    +EL     +     E I+     +K   +
Sbjct: 1107 IIAAAVQQLLDEKALDVRDAAQFEQAKDWVRQELNPTAEQIALKVEQILTLYQGIKKRTK 1166

Query: 1220 PPLLGFARASHDDLREQFDALLVPGFLRELPPARLAHYPRYLKAMRLRGERLRQDPAKDQ 1279
              +      +  D++ Q D L+  GF+      RLA   RYLKA+  R ++L  DP +D+
Sbjct: 1167 GKISLDIAFAMSDIQSQLDQLVFKGFVEACGWNRLADVARYLKAIETRIDKLPVDPTRDR 1226

Query: 1280 QRLLQVLPYWRAYLQHRA----AGADPAGLDELRWLIEEWRVSLFAQELKTAEPVSAKRL 1335
              +  +     A     A    +   PA L E RW+IEE+RVS FAQ L TA P+S KR+
Sbjct: 1227 LHMQSITKVQEALAAQLAKVPRSQPVPAALIEARWMIEEYRVSCFAQALGTAYPISEKRI 1286