Pairwise Alignments

Query, 485 a.a., RNA polymerase factor sigma-54 from Rhodanobacter sp000427505 FW510-R12

Subject, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

 Score =  402 bits (1032), Expect = e-116
 Identities = 234/488 (47%), Positives = 318/488 (65%), Gaps = 8/488 (1%)

Query: 1   MKPALQFRLHQQLTLTPQLQQAIRLLQLSQLELEAELRQIAESNPLLEFAEEVEDEEATE 60
           MKP+LQ +L QQL +TPQLQQAIRLLQLS L+L+ E+++  ESNPLLE  EE +DE  + 
Sbjct: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLE-VEENQDEAPSL 59

Query: 61  DAVVESDYPSVEAVAATAGDDGETSDWSDGGV--AETPIDFSSNSVGS-NSGSGTRGDED 117
           D+V  ++    E       +  ++SD  +     AE  +D + + V S N+GS     +D
Sbjct: 60  DSVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLALDD 119

Query: 118 FEP--QNAAPETLQQHLLWQLNLASFTPRQHLIATVLIDALNPAGYLAEGLEAILAALPA 175
             P  Q    +TLQ +L WQL+L  F+     IA  LIDA++  GYL   LE I  +L +
Sbjct: 120 DAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLRS 179

Query: 176 AFDASIAEIEEVRRCLQGFDPAGVASLDLRDCLRVQLEQFDPDTPQRDLALRIVDTELEL 235
             D  + EIE VR+ +Q FDP GVASL+L+DCL +QL  +  DTP  + A  ++   ++ 
Sbjct: 180 D-DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDD 238

Query: 236 LARNDITRLARRLRTDENDVADAAVLIRSLDPRPGAALDATPVEYVAPDVYALRDGTRWR 295
           L   D   + +  +  E D+ +   LI+ LDPRPG+ +     EYV PDV   ++  RW 
Sbjct: 239 LGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWL 298

Query: 296 VSLNPDAQPRLGLNQHYCGLIAQARGEDASWMRGQLQEARWLIKSLESRAETLLKVAEAI 355
           V++NPD+ P+L +NQ Y  L+ +    +++++R  LQEA+WLIKSLESR ETLLKVA+ I
Sbjct: 299 VTINPDSVPKLKINQQYADLM-RGNNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKCI 357

Query: 356 VRRQSAFLDYGPEAMHPLVLREVAEEVGMHESTISRVTTRKYLHTPRGTFELKYFFSSGV 415
           V  Q  F +YG EAM P+VL +VA  V MHESTISRVTT+KY+HTPRG FELKYFFSS V
Sbjct: 358 VEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHV 417

Query: 416 STEDGGSASATAIQAMLRKLIDAEDVRKPLSDLAIAEELQRKGIQVARRTVAKYREGLRI 475
           ST++GG  S+TAI+A+++KL+ AE+  KPLSD  IA  L  +GIQVARRT+AKYRE L I
Sbjct: 418 STDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLGI 477

Query: 476 PTSSERQR 483
             SS+R+R
Sbjct: 478 APSSQRKR 485