Pairwise Alignments

Query, 602 a.a., DHHA1 domain-containing protein from Rhodanobacter sp000427505 FW510-R12

Subject, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

 Score =  483 bits (1243), Expect = e-141
 Identities = 269/597 (45%), Positives = 376/597 (62%), Gaps = 50/597 (8%)

Query: 19  PDSVHPVLQRIYAARGVLEPGQAEHRLARMLSPQLLGGMAQAVELLVEAIRDDWAILIAG 78
           PD + P+L+R+Y +RGV    Q E     + S + L G+ +AVELL  AI +   I++ G
Sbjct: 16  PDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLFAAIAEQKRIIVVG 75

Query: 79  DYDCDGATGTAVAVRGLRLLGARRVDYAIPNRFAHGYGLSPAFV-ASLQPTPQLIVTVDN 137
           D+D DGAT +A++V  LR+LG+R VDY +PNRF  GYGLSP  V  +++   ++I+TVDN
Sbjct: 76  DFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVDN 135

Query: 138 GVASVAGVAAAQARGIKVIVTDHHLPGEQLPACDALVNPNVGPEKCGQGSPLFDSRVQDA 197
           GV+S+ GV  A+ +G++V+VTDHHLPG++LP  DA+VNPN+  ++C   S          
Sbjct: 136 GVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNL--QQCAFPS---------- 183

Query: 198 RMKNLAGVGVMFYLLLALRAKLHGQGAF---GAAKPDLSPLLDLVALGTVADLVPLDFNN 254
             K LAGVGV FYL++AL   +  QG F   G  +P L  L+DLVALGTVAD+VPLD NN
Sbjct: 184 --KALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNN 241

Query: 255 RVLVEAGLQRMRSGRACAGIAALVEVGKRSLATLCSTDLAFTVGPRLNAAGRLEDMRLGV 314
           R+LV  GLQR+R+G A  GI AL+EV KR    L + D  F +GPR+NAAGRL+DM  GV
Sbjct: 242 RILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGV 301

Query: 315 ACLLTDDAAQARRHAEQLDAINRERRDLQASMVAEAELMAASLGHTD----AVGVALFEP 370
             LL ++   ARR A +LD +N+ R++++  M  EA      L  +D      G+ LF+ 
Sbjct: 302 ELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQR 361

Query: 371 SWHAGVVGLVASKLKERLHRPVIAFAPAGIEECGEGSPPFDSGAQEVRTGNTQLRGSARS 430
            WH GV+G++AS++KE+ HRPVIAFA        EG             G+ +L+GS RS
Sbjct: 362 DWHQGVIGILASRIKEKYHRPVIAFA--------EG-------------GDGKLKGSCRS 400

Query: 431 IPGFHIRDALAAIDARQPGLIERFGGHAMAAGLSLKADDYPRFAAAFDAIARELIEPERL 490
           +PG H+RDAL  ID + PG+I +FGGHAMAAGL+++  ++ RF   FD + RE ++   L
Sbjct: 401 VPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAAL 460

Query: 491 QAVLYTDGELPPGAATLALARQLREAGPWGQAFPEPLFDNLFDCAGWKLMGERHLRLQLR 550
           + ++ +DGEL P   +L  A  LR  GPWGQAFPEPLFD  F     KL+GE+HL+L L 
Sbjct: 461 KGIILSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLE 520

Query: 551 DPRDG----AVHDAVMFNAYHGQPPP---PRLRAAYELTINDWQGRESPRLLLRHIE 600
               G     + D + FN    + P      +R AY+L IN+++G +S +L++ H+E
Sbjct: 521 PLYKGFPTNVMIDGIAFNVDLRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 577