Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Rhodanobacter sp000427505 FW510-R12

Subject, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

 Score =  292 bits (748), Expect = 4e-83
 Identities = 177/414 (42%), Positives = 244/414 (58%), Gaps = 19/414 (4%)

Query: 2   FSKDLEVTIGHCYKRAREQRHEFMTVEHLLLALTENQSA--LGALRACGADLPRLSADLE 59
           F+   ++ I      A  + H+++   HL++AL +   +     L     D+ +L + L 
Sbjct: 6   FTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQLRSKLG 65

Query: 60  RIINETVPVLPPGDERDTQPTLGFQRVLQRAVYHVQSSGRKEVTGANVLVAIFGEKDSHA 119
            +++    V   G +      LG    L   V   Q      ++    L+A   +K    
Sbjct: 66  EMLDRLPKVSGIGGDVQLSSALGSLFNLCDKV--AQKRQDAYISSEIYLLAAIEDKGPLG 123

Query: 120 VYFMHQQEITRLDVVNYISHGIAKIGDEPAAGVSGGEREGEEGGEPKGNPLHEFASNLNE 179
            + + +  +T   V    S  I KI         GG++  +   E     L +F  +L E
Sbjct: 124 -HLLKEFGLTEKKV----SEAIEKI--------RGGQKVNDPNAEELRQALEKFTIDLTE 170

Query: 180 LALEGKIDPLIGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTALAEGLAKRIVDGEVPE 239
            A +GK+DP+IGR DEI RTIQVL RR KNNP+ +GE GVGKTA+ EGLA+RI++ EVPE
Sbjct: 171 RAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPE 230

Query: 240 VLESATIWSLDLGALVAGTKYRGDFEKRLKGVIAQLKKQPG-AILFIDEIHTIIGAGSAS 298
            L    + SLD+GALVAG KYRG+FE+RLK V+ +L K+ G  ILFIDE+HT++GAG   
Sbjct: 231 GLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGE 290

Query: 299 GGTMDASNLIKPMLASGELRCIGSTTFQEYRGVFEKDRALARRFQKIDVVEPTVADSIEI 358
           G +MDA N++KP LA GEL C+G+TT  EYR   EKD AL RRFQK+ V EPTV D+I I
Sbjct: 291 G-SMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAI 349

Query: 359 LKGLRSRFEEHHHVAYTNEALKAAVDLSVKHIPDRLLPDKAIDVIDEAGARQRL 412
           L+GL+ R+E HHHV  T+ A+ AA  LS ++I DR LPDKAID+IDEA +  R+
Sbjct: 350 LRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRM 403



 Score =  281 bits (718), Expect = 1e-79
 Identities = 165/412 (40%), Positives = 238/412 (57%), Gaps = 11/412 (2%)

Query: 333 EKDRALARRFQKIDVVEPTVADSIEILKGLRSRFEEHHHVAYTNEALKAAVDLSVKHIPD 392
           EK+R  A   +++   E       + +K    +      VA     L    +L    IP+
Sbjct: 450 EKERDYAE-LEEVWKAEKAALSGTQHIKAALEQARMDLEVARRAGDLNRMSELQYGRIPE 508

Query: 393 RLLPDKAIDVIDEAGARQRLLPEDQRTGKVDVGEVEYIVAKMARIPAKQVSASDRDVLRN 452
               +K +D+  +A  ++  L  +    KV   E+  +++K   IP  ++  ++++ L  
Sbjct: 509 L---EKQLDLAAQAEMQEMTLLRN----KVTDAEIAEVLSKQTGIPVSKMLEAEKEKLLR 561

Query: 453 LERNLKMVVFGQDPAIEALAASIKMARSGLADPSKPIGCFLLAGPTGVGKTEVTKQLAMQ 512
           +E  L   V GQ  A+E +A +I+ +R+GL+DP++PIG FL  GPTGVGKTE+ K LA  
Sbjct: 562 MEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANF 621

Query: 513 LGIE---MIRFDMSEYMEAHSVSRLVGAPPGYVGFDQGGLLTEAVTKHPHAVLLLDEIEK 569
           L      M+R DMSE+ME HSV+RLVGAPPGYVG+++GG LTEAV + P++V+LLDE+EK
Sbjct: 622 LFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEK 681

Query: 570 AHPDVFNILLQVMDRGVLTDTNGREANFKNVVVVMTTNAGAAIAARRSMGFVEQKHESDA 629
           AHPDVFNILLQV+D G LTD  GR  +F+N VV+MT+N G++           Q  +   
Sbjct: 682 AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFARLDYQGIKEQV 741

Query: 630 MEVIRRIFTPEFRNRLDAIIQFGALDFEHILRVVDKFLIELESQLTEKRVSLDVGADARR 689
           M+V+ + F PEF NR+D  + F  L  EHI  +    L  L  +L E+   L+V  +A  
Sbjct: 742 MDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEALD 801

Query: 690 WLAEHGFDPQMGARPMARVIQEKVKRALADELLFGKLAEGGVVRLSVADGEL 741
            +A  GFDP  GARP+ R IQ+ V+  LA  +L GK   G  + LSV DG +
Sbjct: 802 LIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSVKDGNI 853



 Score = 30.4 bits (67), Expect = 4e-04
 Identities = 72/316 (22%), Positives = 125/316 (39%), Gaps = 88/316 (27%)

Query: 189 LIGRADEIERTIQVLCRRRK-----NNP----LYVGEAGVGKTALAEGLAKRIVDGE--- 236
           +IG+ + +E     + R R      N P    L++G  GVGKT L + LA  + D E   
Sbjct: 570 VIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAM 629

Query: 237 ----VPEVLESATIWSLDLGALVAGTKY-RGDFEKRLKGVIAQLKKQPGAILFIDEIH-- 289
               + E +E  ++  L +GA      Y  G +      +   ++++P +++ +DE+   
Sbjct: 630 VRVDMSEFMEKHSVARL-VGAPPGYVGYEEGGY------LTEAVRRKPYSVILLDEVEKA 682

Query: 290 ---------TIIGAG---SASGGTMDASNLIKPMLASGELRCIGSTTFQE------YRGV 331
                     ++  G      G T+D  N +  M ++     +GS+  QE      Y+G+
Sbjct: 683 HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN-----LGSSRIQENFARLDYQGI 737

Query: 332 FEKDRALARRFQKIDVVEPTVADSIEILKGLRSRFEEHHHVAYTNEALKAAV--DLSVKH 389
            E         Q +DVV                   +H    + N   ++ V   L  +H
Sbjct: 738 KE---------QVMDVV------------------SKHFRPEFLNRVDESVVFHPLGQEH 770

Query: 390 IPDRLLPDKAIDVIDEAGARQRLLPEDQRTGKVDVGEVEYIVAKMARIPAKQVSASDRDV 449
           I       K+I  I  A  RQRL   D +  +VD  E   ++A +   P        R +
Sbjct: 771 I-------KSIASIQLARLRQRLAERDYQL-EVD-DEALDLIAHVGFDPVYGARPLKRAI 821

Query: 450 LRNLERNL-KMVVFGQ 464
            +N+E  L K ++ G+
Sbjct: 822 QQNVENPLAKSILAGK 837