Pairwise Alignments

Query, 501 a.a., transcription termination factor NusA from Rhodanobacter sp000427505 FW510-R12

Subject, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

 Score =  556 bits (1433), Expect = e-163
 Identities = 286/490 (58%), Positives = 373/490 (76%), Gaps = 4/490 (0%)

Query: 1   MSKELLLVVDAVANEKGVPLEVIFEAMEAALASAAKKRYPDEEPDIRVSIDHNTGEYETF 60
           MSKE+L VV+AV+NEK VP E IFEA+E ALA++ KK+Y + E D+RV+ID  TG +ETF
Sbjct: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKY-EIEIDVRVAIDRKTGAFETF 59

Query: 61  RRWEIIADDGEMESPSYQLRLMDALDERADAKVGEYIEQQIENAEFGRIAAQAAKQVIVQ 120
           RRW ++ +   +E P+ ++    A  +    ++G+YIE QIE+  F RI  Q AKQVIVQ
Sbjct: 60  RRWLVVEN---VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQ 116

Query: 121 RVREAERQQVVDAFADRVGELVTGIVKRVERGNIYLDLGSNAEAFIPRDKTIPRESARVG 180
           +VREAER Q+V+ F D  GELVTG+VK+V R  + LDLG+NAEA I R+  +PRE+ R G
Sbjct: 117 KVREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPG 176

Query: 181 DRVRGYLYEVRSEARGPQLFVSRAAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKI 240
           DRVRG LY+V  EARG QLF++R+ PE + ELF++EVPE+G+ L+E+K  ARDPG RAKI
Sbjct: 177 DRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKI 236

Query: 241 AVLAHDSRTDPIGACIGMRGSRVQAVSNDLNGERVDIILWHENQAQYVINAMAPAEVQSI 300
           AV  +D R DP+GAC+GMRG+RVQAVS +L GER+DI+LW +N AQ+VINAMAPA+V SI
Sbjct: 237 AVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASI 296

Query: 301 IMDEEKHSMDIAVAEDKLSQAIGRGGQNVRLASKLTGWQLNVMTQDQVTAKSESEQEAAR 360
           IMDE+ HSMDIAV  D L+QAIGR GQNVRLAS+LTGW+LNVMT   +  K + E  A+ 
Sbjct: 297 IMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASI 356

Query: 361 QLFMDKLEVDQEIAVILVQEGFSSIEEIAYVPSAELLAVEGFDEDIVEELRARARDALLT 420
           + FM  L+++Q+ A +LV+EGFS++EEIAYVP  ELL V+G DED+ +ELR+RA++AL T
Sbjct: 357 ENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTT 416

Query: 421 EALAVEEGVGEHQPSEELLALDGMDEETAFALAARAVTTVDDLADLAVDDLIDIEGMDEE 480
            ALA EE     +P+E+LLAL G++ + AF LAA+ V T++DLAD  VDDL  IEG+ E+
Sbjct: 417 IALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQ 476

Query: 481 RAAALIMAAR 490
           RA  LIMAAR
Sbjct: 477 RAGELIMAAR 486