Pairwise Alignments

Query, 265 a.a., ABC transporter permease subunit from Rhodanobacter sp000427505 FW510-R12

Subject, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score = 72.0 bits (175), Expect = 3e-17
 Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 15/244 (6%)

Query: 4   RRVLASLLALALVAPPLLLGMLSVARQWRWPALWPTAWQVQQWHE----VAGDLTGAGMM 59
           + +L  L  ++    PL L + S+A++WR+P L+PT W  Q W++    V  ++  + ++
Sbjct: 298 KSILTLLFTISGAMIPLTL-IWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLL 356

Query: 60  GALARSLALALTVAVVATALGLPTSRRVAGLPRRGAWLTALHLPYALSPVVLAVGLLFAF 119
              + SLAL L   ++A    L T R +         +  + LP  L  + L  G+    
Sbjct: 357 ALGSGSLALLL--GILAQEYRLHTQRAIP--------VYIIALPMLLPQLSLLFGIQVLT 406

Query: 120 LHLHLAGHLLGVLLAQLVFAYAYAVILLSALWTPRVAALEDLASTLGARRLQVWWRVLVP 179
           L +    +   V+ A   FA+    + LS  W    +    +A +LG    Q++W++ +P
Sbjct: 407 LLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLP 466

Query: 180 VARPMLAVCLFQTFLISWFDYALVRLIGQGEVQTLTIRLFEYFTSGDLRLAATCALILMT 239
           +  P L         +S   Y    ++G G + T+T       +  D R+ A  AL    
Sbjct: 467 LLFPALLYAWAVGISVSLAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQAL 526

Query: 240 PPLV 243
            P V
Sbjct: 527 LPFV 530



 Score = 40.4 bits (93), Expect = 8e-08
 Identities = 44/190 (23%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 62  LARSLALALTVAVVATALGLPTSRRVAGLPRRGAWLTALHLPYALSPVVLAVGLLFAFLH 121
           +  SL++ L +  VA A+G       A L     WL  L L Y       +  + +    
Sbjct: 92  IENSLSILLALPHVAFAIGF------ASLFASTGWLARL-LYYGFELRDNSHEVTWLVHD 144

Query: 122 LHLAGHLLGVLLAQLVFAYAYAVILLSALWTPRVAALEDLASTLGARRLQVWWRVLVPVA 181
            +  G  + + L ++ F    ++ +L  L    +  ++ L+++LG    Q+WW+++ P  
Sbjct: 145 PYAIGLTIALALKEVPFILLISLPILQQL---NLTKMKMLSASLGYSEPQMWWKIVFPQW 201

Query: 182 RPMLAVCLF--QTFLISWFDYALVRLIGQGEVQTLTIRLFEYFTSGDLRL---AATCALI 236
              +   LF    + IS  D++LV  +G     T ++ ++++F   DL L   AA+ A++
Sbjct: 202 LRKIRFTLFAVAAYAISVVDFSLV--LGPTTPPTFSVLVWQWFNEPDLNLLPRAASGAVV 259

Query: 237 LMTPPLVTLL 246
           L+    + L+
Sbjct: 260 LLLLASIVLV 269