Pairwise Alignments

Query, 603 a.a., N-6 DNA methylase from Rhodanobacter sp000427505 FW510-R12

Subject, 506 a.a., type I restriction-modification system, M subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  254 bits (650), Expect = 5e-72
 Identities = 172/523 (32%), Positives = 274/523 (52%), Gaps = 33/523 (6%)

Query: 89  SPVLSTKPMEQMLWDAACQIRGEKDAPKFKDYLLPLLFIKRLSDVFDDEVQRLAETYGDR 148
           +P +S K +   +W+A    RG  DA  +KDY+L +LF+K +SDV+ D        YGD 
Sbjct: 2   TPRISQKEVNDAVWNACDTFRGVVDASAYKDYVLTMLFLKYISDVWQDNYDTYKAEYGD- 60

Query: 149 VTALAVLDADPTLVRFYLPPETRWPVISGRETFAWPPKRTPKTLGEQLTTTVRALVKANP 208
             A  +++      RF LP +  +        +A   +R     GE++   + A+ +AN 
Sbjct: 61  --APELIEEMMKNERFVLPKDASF--------YALYERRFEAGNGERIDKALHAIEEANM 110

Query: 209 D-LAGVIDTVDFNESRNGEREISDKALKGVVETFSDPRYRLGLHDV-EPDFLGRCYEYLL 266
             L  V   + FN ++ G+ +  +  L+ ++E FS P   L    +   D +G  YE+L+
Sbjct: 111 GKLNDVFQDISFNSTKLGDDKQKNDILRHMLEDFSKPELNLRPSRIGNLDIIGNAYEFLI 170

Query: 267 RKFAEGQGQSAGEFFTPREVGFLMAEILRPRPGEQAYDYACGSFGLLIKLQLVCRRL--D 324
           + FA   G+ AGEF+TP EV  L+AE++ P+ G++  D ACGS  LL+K    C +L  D
Sbjct: 171 KHFAASSGKKAGEFYTPPEVSQLIAELVNPQEGDEICDPACGSASLLMK----CAKLIKD 226

Query: 325 PLSKIPLKLYGQELTGSSYAIACMNRIIHDMQGEVLR-GDSMRNPKYRDG-NALKRFDLI 382
                   LYGQE  GS++++A MN  +H      +  GD++RNP   DG + LK FD++
Sbjct: 227 RFGNRKYALYGQEAIGSTWSLAKMNMFLHSEDNHRIEWGDTLRNPLLLDGDDHLKHFDIV 286

Query: 383 IANPMWN-QSFDPAIYENDPFGRFEETGGVTTGKADWAWLQHTIASL-GDNGRAAVVLDT 440
           +ANP ++   +     E D FGRF   G     K D+A++ H I +L    GR  VV+  
Sbjct: 287 VANPPFSLDKWGHEAAEADRFGRFRR-GIPPKTKGDYAFILHMIETLKPGTGRMGVVVPH 345

Query: 441 GAVTRGSGSKNEDKERNIRRWFVEHDLIDGVILLPDNLFYNTTAAGIIVVLRRNKPKGRK 500
           G + R S       E  IR+  ++ +L+D VI LP+ LFY T     I+V R+NK   + 
Sbjct: 346 GVLFRAS------SEGEIRKQLIKENLLDMVIGLPEKLFYGTGIPAAILVFRKNK---KD 396

Query: 501 GKIMLVNASREFRKGNPKNHLTDDAIGRIASAWLKGEAVDGLVAVIDKAKAEENDYNLSP 560
             ++ ++ASRE++ G  +N L D+ I ++       E+VD    +    +  END+NL+ 
Sbjct: 397 NNVLFIDASREYQDGKNQNFLRDEDIQKVLDTAKARESVDKYAYLATLEEIRENDFNLNI 456

Query: 561 SRYLANGDAKTLREIPAIVKELAALKKDEAKLDAELAKVLAQL 603
            RY+   + +   ++ A++KE   LK D AKL+ E+   L +L
Sbjct: 457 PRYVDTFEEEEEIDLEAVLKERKELKADLAKLEVEMEGYLKEL 499