Pairwise Alignments

Query, 1404 a.a., DNA-directed RNA polymerase subunit beta' from Rhodanobacter sp000427505 FW510-R12

Subject, 1402 a.a., DNA-directed RNA polymerase, beta'' subunit, predominant form from Dechlorosoma suillum PS

 Score = 1919 bits (4972), Expect = 0.0
 Identities = 969/1400 (69%), Positives = 1145/1400 (81%), Gaps = 4/1400 (0%)

Query: 1    MKDLLNLFNQQRTTPDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA 60
            MK LL+LF Q     +FDAI I+LASP+ IRSWSYGEVKKPETINYRTFKPERDGLFCA 
Sbjct: 1    MKALLDLFKQVTQEEEFDAITISLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL 120
            IFGP+KDYECLCGKYKR+KHRGV+CEKCG EVTLAKVRRERMGHIELASPTAHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERILYFEAFVVIDPGMTALERGQLLSEDQYLEATEEHGDEFDARM 180
            PSR+G++LDMTLRDIER+LYFEA+VVI+PGMT+L RGQLL+ED YL   EE+GD+F A M
Sbjct: 121  PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTSLNRGQLLTEDDYLAKVEEYGDDFIALM 180

Query: 181  GAEAVFHLLKSLDLPGEVIRLKEEIASTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT 240
            GAEAV  LL++LDL  EV RL+ E+ +T SE K K++ KR+K++E F +SG KP+WM+L 
Sbjct: 181  GAEAVRELLRTLDLDHEVERLRSELETTGSEAKNKKIAKRLKILEGFQKSGIKPDWMILE 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLEL AP+IIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT 360
            ESVD+LLDNGRRG+A+TG NKR LKSLADMIKGK GRFRQNLLGKRVDYSGRSVIVVGP 
Sbjct: 301  ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360

Query: 361  LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEGQVWDILEEVIREHP 420
            L+LHQCGLPK MALELFKPFIF KL+  G ATTIK AKK+VE +E  VWDILE+VIREHP
Sbjct: 361  LKLHQCGLPKLMALELFKPFIFHKLELMGLATTIKQAKKMVESQEPVVWDILEDVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA 480
            V+LNRAPTLHRLGIQAFEP LIEGKAIQLHPLVC AFNADFDGDQMAVHVPLS+EAQ+EA
Sbjct: 421  VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA 480

Query: 481  RTLMMSSNNILSPANGEPIIVPTQDVVLGLYYMTRELINAKGTGMVFSGVSEARRAYDNR 540
            RTLM++SNN+LSPANGEPIIVP+QD+VLGLYY TR+ INAKG GM F+ VSE  RA ++ 
Sbjct: 481  RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYATRDRINAKGEGMNFADVSEVLRAVNSG 540

Query: 541  AVELHAKVKVRLKLVHIAEDGTRSSETRLVETTVGRALLAEILPEGLPFELANTELTKKN 600
              +LHAKV VRLK     E G    +     TT GRA+L+EILP+GLPF + +  L KK 
Sbjct: 541  LADLHAKVSVRLKEYVRGESGEWVEKITRYNTTCGRAILSEILPKGLPFSVIDKALKKKE 600

Query: 601  ISRLINSSYRLLGLKETVVFADKLMYTGYRFATRAGISIGIDDMLIPNEKKTILDEAEKE 660
            IS+LIN+S+R  GLKETVVFADKLM  GY  ATRAGIS   DDM +P EK TI+ EAEKE
Sbjct: 601  ISKLINTSFRRCGLKETVVFADKLMQNGYALATRAGISFCSDDMRVPTEKHTIIAEAEKE 660

Query: 661  VVEIQQQYQSGLVTAGERYNKVVDIWSRTSEQVAKAMIDGIGTEKVVDAEGKMVSQKSMN 720
            V EI+ QY +GLVT GERYNKVVDIW RT +QVAK M++ +G E+VVD  GK V Q+S N
Sbjct: 661  VKEIETQYTNGLVTFGERYNKVVDIWGRTGDQVAKVMMEQLGHEEVVDRHGKTVKQESFN 720

Query: 721  SLYIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR 780
            S+Y+MADSGARGS AQIRQLAGMRGLMA+PDGSIIETPI  NFREGLNVLQYF STHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTMDDCGTEDGVTMQPIVEGGDVVEPLRDRVL 840
            KGLADTALKTANSGYLTRRLVDV QD+VVT DDCGT++GVTM+ ++EGG+V+EPLRDR+L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTQNGVTMKALIEGGEVIEPLRDRIL 840

Query: 841  GRVVVEDVYAPGDDDRPIVTRDTLLNEALVEKLDKAGVQIIKVRSPITCEAVHGVCKLCY 900
            GRVVV DV  P + +  ++   TL++E L + +DK G+  +KVR+P+TC+  +G+C  CY
Sbjct: 841  GRVVVADVVNP-ESEETVIEAGTLVDEDLCDLIDKLGIDEVKVRTPLTCDTRYGLCAKCY 899

Query: 901  GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVKTTGSLK 960
            GRDL RG LVN+GEAVGV+AAQSIGEPGTQLTMRTFH+GGAASRAA  D V  K+ G ++
Sbjct: 900  GRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVADRVDTKSNGVVR 959

Query: 961  FN-NLKSVQHKQGHLVAVSRSGELSVIDASGRERERYKVPYGAVIAVKDGAPVKPGQTVA 1019
            F   ++ V + +G  +  +RSGE+ V D +GRERER+KVPYGA++   DG  VK G  +A
Sbjct: 960  FTATMRYVTNVKGEKIVFTRSGEVLVTDDNGRERERHKVPYGAILTADDGQVVKAGAVLA 1019

Query: 1020 NWDPHTHPIVTEVAGVVRFIDFLDGVTVQSQTDELTGLESAVVTDPKRRG-AQAKDLRPI 1078
             WDPHT P++TE AG ++F +  +G TV  Q D++TGL + VV DPKR G AQAK LRP 
Sbjct: 1020 TWDPHTRPMITEYAGTIKFENVEEGSTVAKQIDDVTGLSTLVVIDPKRGGKAQAKGLRPQ 1079

Query: 1079 VRLEDAKGRELKLPGTDIAAQYFLPAGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGG 1138
            V+L D  G+E+K+ GT+ A       G+I+++ +G +VGVGDV+A+IPQE++KTRDITGG
Sbjct: 1080 VKLLDENGQEVKMHGTEHAVTITFQVGSIITVADGQQVGVGDVLAKIPQESAKTRDITGG 1139

Query: 1139 LPRVADLFEARKPKEPAILAERSGIISFGKDTKGKQRLIIKDVDGNEHEELIPKWRQVIV 1198
            LPRVA+LFEAR PK+  +LAE +G +SFGKDTKGKQRL+I D+DG  HE LI K + V+V
Sbjct: 1140 LPRVAELFEARTPKDVGMLAEYTGTVSFGKDTKGKQRLVITDLDGVAHEYLILKDKHVMV 1199

Query: 1199 FEGEHVEKGETVVDGEPSPHDILRLLGVEPLATYLVKEIQDVYRLQGVKINDKHIEAIIR 1258
             +G+ V KGE +VDGEP PH+IL+L GVE LA Y+  E+QDVYRLQGVKINDKHIE I+R
Sbjct: 1200 HDGQVVNKGEVIVDGEPDPHEILKLKGVEALARYITDEVQDVYRLQGVKINDKHIEVIVR 1259

Query: 1259 QMLRKVEIVEPGESHYLRGEQVERVRINGENERALAKGERPAEYQSVLLGITKASLATES 1318
            QMLR+V I EPG++ +++ EQVER  +  EN+R +A+G+ PA Y  +LLGITKASL+T+S
Sbjct: 1260 QMLRRVTITEPGDTRFIKSEQVERADVLDENDRVVAEGKLPASYDYMLLGITKASLSTDS 1319

Query: 1319 FISAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHASRRRQGGLTAT 1378
            FISAASFQETTRVLTEAA+ G RD LRGLKENVIVGRLIPAGTGLAYH SRR+Q      
Sbjct: 1320 FISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHNSRRQQAAGNDQ 1379

Query: 1379 ELETLSGSTPAVSFAEAPAG 1398
             L+ + G    V+  E PAG
Sbjct: 1380 GLDRVLGGED-VAVEEVPAG 1398