Pairwise Alignments

Query, 288 a.a., RNA polymerase sigma factor RpoH from Rhodanobacter sp000427505 FW510-R12

Subject, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

 Score =  324 bits (830), Expect = 2e-93
 Identities = 163/266 (61%), Positives = 209/266 (78%), Gaps = 2/266 (0%)

Query: 18  SLDAYISAVHRIPVLSQEEEQALSRDYLEEANLAAAKKLVMSHLRFVVHVARGYSGYGLQ 77
           SLD+YI +V+  P+LS +EE+ L+     + ++ AAK L++SHLRFVVHVARGYSGYGL 
Sbjct: 15  SLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLP 74

Query: 78  LADLIQEGNIGLMKAVKRFDPDQGVRLVSFAVHWIRAEMHEFILKNWRIVKVATTKAQRK 137
           +ADL+QEGNIGLMKAVKRF+P+ GVRLVSFAVHWI+AE+HE++L+NWRIVK+ATTKAQRK
Sbjct: 75  MADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRK 134

Query: 138 LFFNLRKSKKRLGWMNAAEVSTVAKDLGVPEATVREMESRLSGRDIGFEAPVDADDD--A 195
           LFFNLRKSKKRLGW N  EV TVA++LGV  A VREMESRL+ +D  FE   + D++  A
Sbjct: 135 LFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAEDDENGMA 194

Query: 196 KPAPAAFLVDDGADPYQNVADEDYADNQMETLNDALAHLDPRSRDIIQRRWLDDSSKATL 255
             AP  +L D  +D   N+  E++  +  + L+ ALA LD RS+ I++ RWLDD +K TL
Sbjct: 195 YTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARWLDDDNKTTL 254

Query: 256 QDLADEYGVSAERIRQIEANAMKKMR 281
           QDLA+ YGVSAERIRQ+E NAM+K++
Sbjct: 255 QDLAEMYGVSAERIRQLEKNAMRKLK 280