Pairwise Alignments

Query, 979 a.a., excinuclease ABC subunit UvrA from Rhodanobacter denitrificans FW104-10B01

Subject, 940 a.a., UvrABC system protein A from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 1368 bits (3540), Expect = 0.0
 Identities = 671/942 (71%), Positives = 794/942 (84%), Gaps = 3/942 (0%)

Query: 1   MDTIRIRGARTHNLKNIDLDLPRDQLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSSY 60
           MD I +RGARTHNLKNI+L +PRD+LIV+TGLSGSGKSSLAFDT+YAEGQRRYVESLS+Y
Sbjct: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGTPRC 120
           ARQFLS+MEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITE++DYLRLL+ARVG PRC
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120

Query: 121 PDHGIPLEAQTVSQMVDATLALDPEQRYMLLAPVIRERKGEHVQVFEQLRAQGFVRARVD 180
           PDH +PL AQTVSQMVD  L+    +R MLLAP+I+ERKGEH +  E L +QG++RAR+D
Sbjct: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180

Query: 181 GTVFDLDAVPPLTLRQKHTIEVVIDRFRPREDIKQRLAESFETALRLGDGLVILANMDAG 240
           G V DL   P L L++KHTIEVV+DRF+ R+D+ QRLAESFETAL L  G  ++A+MD  
Sbjct: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMD-D 239

Query: 241 ANAKEQMLSSRYSCPVCDYSLPELEPRLFSFNSPIGACPSCDGLGVTQVFDAARVVGHPE 300
             A+E + S+ ++CP+C YS+ ELEPRLFSFN+P GACP+CDGLGV Q FD  RV+ +PE
Sbjct: 240 PKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPE 299

Query: 301 LPLSNGAVRGWDRRNAHYFQLILSLATHYGFDVDTPWNKLPADVQKAILYGSGKDRIAFR 360
           L L+ GA+RGWDRRN +YFQ++ SLA HY FDV+ PW  L A+V K +LYGSGK+ I F+
Sbjct: 300 LSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFK 359

Query: 361 YITERGGKVTREHAFEGILPNLERRYKETESAAVREELAKYISDQPCPECAGQRLNRSAR 420
           Y+ +RG    R H FEG+L N+ERRYKETES+AVREELAK+IS++PC  C G RL R AR
Sbjct: 360 YMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREAR 419

Query: 421 NVFVADHALPSLTARSIDDALAFFEELKLAGWRGEIAVKIVKEIRERLSFLNDVGLNYLT 480
           +V+V +  LP+++  SI  A+ FF  LKLAG R +IA KI+KEI +RL FL +VGLNYLT
Sbjct: 420 HVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLT 479

Query: 481 LDRQADSLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGN 540
           L R A++LSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTL  LRDLGN
Sbjct: 480 LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGN 539

Query: 541 TVIVVEHDEDAIRMADHVLDIGPGAGVHGGEIVAQGSVQDMLDSPRSVTGQFLSGERAIE 600
           TVIVVEHDEDAIR ADHV+DIGPGAGVHGGE+VA+G ++ ++  P S+TGQ++SG+R IE
Sbjct: 540 TVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIE 599

Query: 601 VPKQRRLPNDDAYWLCLNGASGNNLKNVDLAIPAGLFTCVTGVSGSGKSTLVNDTLFRLA 660
           VPK +R+P +    L L GA GNNLK+V L +P GLFTC+TGVSGSGKSTL+NDTLF +A
Sbjct: 600 VPK-KRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIA 658

Query: 661 AAELNGAS-AQPAPFQSVTGLELFDKVVDIDQSPIGRTPRSNPATYTGLFTPLRDMFSQV 719
             +LNGA+ A+PAP++ + GLE FDKV+DIDQSPIGRTPRSNPATYTG+FTP+R++F+ V
Sbjct: 659 QRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGV 718

Query: 720 PEARARGYTPGRFSFNVRGGRCEACEGDGMLKVEMHFLPDVYVPCDACHGKRYNRETLEI 779
           PE+RARGYTPGRFSFNVRGGRCEAC+GDG++KVEMHFLPD+YVPCD C GKRYNRETLEI
Sbjct: 719 PESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEI 778

Query: 780 LYKGHTIADVLDMTVEDALKLFENVPTIARKLDTLRAVGLDYIKLGQSATTLSGGEAQRV 839
            YKG TI +VLDMT+E+A + F+ VP +ARKL TL  VGL YI+LGQSATTLSGGEAQRV
Sbjct: 779 KYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRV 838

Query: 840 KLSKELSKRDTGNTLYILDEPTTGLHFHDIEQLLDVLHQLVDQGNTVVVIEHNLDVIKTA 899
           KL++ELSKR TG TLYILDEPTTGLHF DI+QLLDVLH+L DQGNT+VVIEHNLDVIKTA
Sbjct: 839 KLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTA 898

Query: 900 DWVVDLGPEGGAGGGRILVAGTPETVAATPESHTGHFLAPHL 941
           DW+VDLGPEGG+GGG ILV+GTPETVA    SHT  FL P L
Sbjct: 899 DWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940



 Score =  143 bits (361), Expect = 5e-38
 Identities = 78/200 (39%), Positives = 113/200 (56%), Gaps = 15/200 (7%)

Query: 763 PCDACHGKRYNRETLEILYKGHTIADVLDMTVEDALKLFENVPT--------------IA 808
           PC +C G R  RE   +  +   +  + DM++  A++ F N+                I 
Sbjct: 405 PCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIG 464

Query: 809 RKLDTLRAVGLDYIKLGQSATTLSGGEAQRVKLSKELSKRDTGNTLYILDEPTTGLHFHD 868
            +L  L  VGL+Y+ L +SA TLSGGEAQR++L+ ++     G  +Y+LDEP+ GLH  D
Sbjct: 465 DRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 523

Query: 869 IEQLLDVLHQLVDQGNTVVVIEHNLDVIKTADWVVDLGPEGGAGGGRILVAGTPETVAAT 928
            E+LL  L  L D GNTV+V+EH+ D I+ AD V+D+GP  G  GG ++  G  E + A 
Sbjct: 524 NERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAV 583

Query: 929 PESHTGHFLAPHLKPAKPKK 948
           PES TG +++   K   PKK
Sbjct: 584 PESLTGQYMSGKRKIEVPKK 603