Pairwise Alignments

Query, 193 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Rhodanobacter denitrificans FW104-10B01

Subject, 183 a.a., Ribosomal RNA small subunit methyltransferase D from Acinetobacter radioresistens SK82

 Score =  143 bits (360), Expect = 2e-39
 Identities = 81/179 (45%), Positives = 111/179 (62%), Gaps = 3/179 (1%)

Query: 11  RIRIIGGSLRNSRLEVPNLPGLRPTAERVRETLFNWLAPVIDGARCLDLCAGTGALGIEA 70
           ++RIIGG  +  +L   ++ GLRPT +RVRETLFNWL   I  A  LD+CAG+GAL  EA
Sbjct: 4   QLRIIGGEWKRRQLPFASIEGLRPTPDRVRETLFNWLMWEIQNAHILDICAGSGALAFEA 63

Query: 71  LSRGAAAVQFVERDARAAQALRANLARLKADGGQVAALEAEAFLRGTAQPCDLVFLDPPF 130
           LSRGAA+V  +E +   A  L+ N   LKA+  Q+    A+  L    Q  D+VFLDPP+
Sbjct: 64  LSRGAASVVMIEPNTIQASFLQQNRQLLKAENSQLKIATAQQVLPTLQQSFDVVFLDPPY 123

Query: 131 ALELWPALARQLEQGGWLAARAWIYVESPRG-PAPALPPNWQLHREGQAGEVRFALYRR 188
           +L+LW  LA   +    +  +A+IYVE+ R      LP NWQL ++ +AG VR  LY++
Sbjct: 124 SLDLWQELAELADP--LIKDQAYIYVEADRELQWLQLPANWQLLKQTKAGTVRAGLYQK 180