Pairwise Alignments

Query, 320 a.a., Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 319 a.a., ribose ABC transporter, periplasmic ribose-binding subunit from Pseudomonas putida KT2440

 Score = 85.9 bits (211), Expect = 1e-21
 Identities = 82/316 (25%), Positives = 151/316 (47%), Gaps = 21/316 (6%)

Query: 6   LMVAATASIATSLPAKAA-AKDAKVILLTVSEECEYCSRHLQS----FRKKAEEEGISLK 60
           L +A  +S++ +LP  AA A+D   + L +        R ++     ++K   +E   + 
Sbjct: 10  LALAVISSLSLALPLSAAHAEDKPKVALVMKSLANEFFRTMEDGAKDYQKTHADEFELIA 69

Query: 61  VKITN-FDPAEQASQVDQAIAERPDAIVLWPADASAIVPSLRKIKSAGIPLV-VTNSL-P 117
             I N  D  EQ   V+Q +     A+V+ PAD+ A+V +++K    G+ ++ + N L P
Sbjct: 70  NGIKNETDTGEQIRIVEQMVNAGAKALVIAPADSKALVSAVKKAMDQGVVVINIDNRLDP 129

Query: 118 DMKYSKFWDV-YTGPNDKASGASAAKAMEQGFKDKGYGNGGDVFLVLGVPGTPPQIGRET 176
           D+  SK   V + GP+++      A+ +      +    G  V ++ GV  T     R  
Sbjct: 130 DLLKSKGISVPFVGPDNR----KGARLVGDYLASQKLKAGDQVGIIEGVSTTTNAQQRTA 185

Query: 177 GFREGLASSVPGIQIKGAQPGNWDQTKASEAASALFTQFGSNVKGVYAQADNMMAGVIVA 236
           GF++  A     ++I   Q GNW+  K +  A+++  ++  ++K + A  D+M  G + A
Sbjct: 186 GFKD--AMDAAQMKIVSVQSGNWEIDKGNAVAASMLNEY-PDLKALLAGNDSMALGAVSA 242

Query: 237 AQRAGIDPSKLVLVGSNCSIEGVTAIESGTQYATVLQSPVQDGEYAARAVAELLDGKKP- 295
            + AG    ++ +VG +        +E G   AT+ Q+  Q   Y  +A  +++ G+KP 
Sbjct: 243 VRAAG-KTGQVQVVGYDNINAIKPMLEDGRVLATLDQAASQQAVYGIQAALKMVKGEKPD 301

Query: 296 ---ENVRYLPQQIITK 308
              +NV   P ++ITK
Sbjct: 302 VDADNVIQTPVELITK 317