Pairwise Alignments

Query, 320 a.a., Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 309 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 95.1 bits (235), Expect = 2e-24
 Identities = 76/269 (28%), Positives = 117/269 (43%), Gaps = 20/269 (7%)

Query: 53  EEEGISLKVKITNFDPAEQASQVDQAIAERPDAIVLWPADASAIVPSLRKIKSAGIPLVV 112
           E +G++L+V+    D A+Q SQ+   IA + DAI++ P D  A     +    A IPLV 
Sbjct: 48  ELKGVTLQVEDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVY 107

Query: 113 TN-------SLPDMKYSKFWDVYTGPNDKASGASAAKAMEQGFKDKGYGNGGDVFLVLGV 165
            N       SLPD           G    AS  + A  +E     +  G  G+  +++G 
Sbjct: 108 VNRQPVNVDSLPD-----------GQAFVASDETVAGTLEAKEVCRLLGGKGNAVIMMGE 156

Query: 166 PGTPPQIGRETGFREGL-ASSVPGIQIKGAQPGNWDQTKASEAASALFTQFGSNVKGVYA 224
                   R    ++ L      GI +   Q  NW +T+ S+  +   +  G     V A
Sbjct: 157 LSNQAARMRTQSAKDVLKTDECKGISVVEEQTANWQRTQGSDLVTNWLSS-GIEFNAVIA 215

Query: 225 QADNMMAGVIVAAQRAGIDPSKLVLVGSNCSIEGVTAIESGTQYATVLQSPVQDGEYAAR 284
             D M  G I A + AG D    V+ G + + + + A+++G    TV Q     G+ A  
Sbjct: 216 NNDEMAIGAIQALKAAGKDMKSYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALD 275

Query: 285 AVAELLDGKKPENVRYLPQQIITKANVND 313
           A  +L+ G K E   Y+P Q++T  NV D
Sbjct: 276 AALKLVKGDKIEKKVYIPFQLVTPENVKD 304