Pairwise Alignments

Query, 196 a.a., ABC-type amino acid transport, signal transduction systems, periplasmic component/domain from Pseudomonas fluorescens FW300-N2E2

Subject, 249 a.a., hypothetical protein from Pseudomonas sp. S08-1

 Score = 45.8 bits (107), Expect = 6e-10
 Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 11/195 (5%)

Query: 2   GDVAVAAMTRAGYTVKVHVLPWARAQKHVSEEHDHLITPLSRIPTREDRFTWIASIMPME 61
           GD+      R     + H +PW R Q  V+ +   ++  L R   RE  F W+  ++   
Sbjct: 43  GDLMDELCKRLQRECRYHSVPWKRVQLAVAGDPHGIVLNLGRTAEREKGFVWLLDVVSTS 102

Query: 62  RAFFSLERRVSSFAQAKETYRKIGV-GLGSAQEDI-LRSEGFSDEQIYPLAIGDNPAQML 119
               S ++R  S   A      + + G   A E + L+ EG   +++  +   +  A+ML
Sbjct: 103 YVLASPKQRFDSLGDALAAGPLVVMGGTPRALEALALKREG---QKVVEVTDPEQAARML 159

Query: 120 LMGRIDAWFNGVPESRYIWPKVS---ERKLLMSSVGSSADLYLACSK--QCSPKMVEDLR 174
             GR+ AW+       Y+W ++    ++     SVG SA  ++A S   + + ++   ++
Sbjct: 160 QGGRVLAWYEIDLRVHYLWRRLGYAPDQLQAGRSVG-SAHSFIAGSPVLEGAAELGAQMQ 218

Query: 175 EAVEALRADGTVKHI 189
           +A  A+  D + + I
Sbjct: 219 QAFVAMHGDDSWRRI 233