Pairwise Alignments

Query, 1213 a.a., Exonuclease SbcC from Pseudomonas fluorescens FW300-N2E2

Subject, 1047 a.a., exonuclease subunit SbcC from Escherichia coli ECRC99

 Score =  334 bits (856), Expect = 3e-95
 Identities = 366/1251 (29%), Positives = 545/1251 (43%), Gaps = 250/1251 (19%)

Query: 1    MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR 60
            MKIL++RLKNL SL G ++IDFT EP AS GLFAITGPTGAGK+TLLDA+CLAL+   PR
Sbjct: 1    MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60

Query: 61   LNNTGRDAKVPDVDGEIATGDPRTLLRRGTGDGYAEVDFRGIDGRRYRARWEANRAREKA 120
            L+N  +                  L+ R T +  AEV+F  + G  YRA W  NRAR + 
Sbjct: 61   LSNVSQSQN--------------DLMTRDTAECLAEVEFE-VKGEAYRAFWSQNRARNQP 105

Query: 121  GGKLQASRQSLRDLDNDQLLASQKGEYKTQLETALGLNFEQFTRAVLLAQSEFSAFLKAD 180
             G LQ  R  L    + ++LA +                                     
Sbjct: 106  DGNLQVPRVELARCADGKILADK------------------------------------- 128

Query: 181  DNERSELLEKLTDTALYTRLGRRAFDKAKHAKETHKQLQDQATGVTPLAPEARAELDQRF 240
                  + +KL  TA  T L    F ++          Q Q        P+ RAEL +  
Sbjct: 129  ------VKDKLELTATLTGLDYGRFTRSMLLS------QGQFAAFLNAKPKERAELLEEL 176

Query: 241  TEAQL--QLKAQQAQLKQLEQQHTWLRDLGLLQDEHASAAEQLQQAQADWNALADERLKL 298
            T  ++  Q+ A                   ++ ++H SA  +L++ QA  + +A      
Sbjct: 177  TGTEIYGQISA-------------------MVFEQHKSARTELEKLQAQASGVA------ 211

Query: 299  VRLEQLAPQRHQFIRQTELNRQLEPLTAQIQQLTQQQIDLHAQQAELEKALDDAQQALAS 358
                 L P+            Q++ LTA +Q LT +           EK L  AQQ    
Sbjct: 212  ----LLTPE------------QVQSLTASLQVLTDE-----------EKQLLTAQQQ--- 241

Query: 359  ARQQSIDSAPLLRQAFGEQSTLARLAQDANLSAERQEQAQQACTEGQRTIDTLLEQQRQV 418
              QQS++    L +   E S   +  Q A L+ E + Q Q A         +L +  R +
Sbjct: 242  -EQQSLNWLTRLDELQQEASRRQQALQQA-LAEEEKAQPQLAAL-------SLAQPARNL 292

Query: 419  AERLQRIADALEQSTHLAPLSDAWNAYRDRLQQLMLIGNRLNQGQAELATLEQSATRAAE 478
                +RIA+      H A L+          QQ+  +  RL    A  A++   A + + 
Sbjct: 293  RPHWERIAE------HSAALAHT-------RQQIEEVNTRLQNTMALRASIRHHAAKQSA 339

Query: 479  ELATRRQDLEVLYKEAGAEPQAVAEQIQLLGTLLQDNRKQLRAFEDLT--RLWASQQELD 536
            EL                      +Q Q L T LQ++ +  +   +L   R   SQQ  D
Sbjct: 340  ELQ---------------------QQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSD 378

Query: 537  KRGAELEQRQQRALQERDRLVREGGEAKAELTI---AEQTLTVTRELLERQRLARSESVE 593
            +    L Q QQ+      +L      A A +T+   A++  T   +  E++ L   + + 
Sbjct: 379  RE--HLRQWQQQLTHAEQKL-----NALAAITLMLTADEVATALAQHAEQRPLR--QRLV 429

Query: 594  QLRAQLQDEQPCPVCGSVEHPYHQPEALLENLGRFDETEEANARKAVDLLNEKVIDLRTQ 653
             L  Q+  +Q             Q    ++N+     T E   R A   LNE    +R +
Sbjct: 430  ALHGQIVPQQK---------RLAQLMVTIQNV-----TLEQTQRNAA--LNE----MRQR 469

Query: 654  YSGVIAQLKELKQQQEQLASQQQSLAPSLEAHPLSAQLLAQDSNKRDTWLAQQNSQLHQH 713
            Y     QL ++K        +Q++   +LEA    AQL A          +    + +Q 
Sbjct: 470  YKEKTQQLADVKT-----ICEQEARIKTLEAQ--RAQLQAGQPCPLCGSTSHPAVEAYQA 522

Query: 714  ISQDEQRQTALLTLQQDAARLAQQ---LRDAETASQQAAQQLSNQQQELARDRQRLDDEL 770
            + +    Q+ LL L+ +  +L ++   LR    A  +  Q+  N+ Q L +D Q L  + 
Sbjct: 523  L-EPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENEAQSLRQDEQALTQQW 581

Query: 771  SHFSALL-----PADTLQ----------------ALRTEPAATFMQLDQQIAQRLEQLEQ 809
               +A L     P D +Q                + R E        +QQI Q  +Q+EQ
Sbjct: 582  QAVTASLNITLQPQDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQ 641

Query: 810  QRDELSEQLQRQQTLEKEQDRQQTRLQQLEAVRLQFSALSEQQQACQQQLTQLLGEHTSA 869
            ++ +L   L        ++D +++ L    A R Q  A S QQ+  Q +LT L       
Sbjct: 642  RQQQLLTALAGYALTLPQEDEEESWL----ATRQQ-EAQSWQQR--QNELTALQNRIQQL 694

Query: 870  EQWQQQLDQRLEQTRDAEATANQQLQQLRNDLVQLAAELKARQEQARSLDLERQALAAGI 929
                + L Q  +     E  A    +Q+    + L ++ +  Q+Q     L  Q+L    
Sbjct: 695  TPILETLPQSDDLPHSEETVALDNWRQVHEQCLALHSQQQTLQQQDV---LAAQSLQKAQ 751

Query: 930  AQWRTSHPE--LDDAALEALLGLDDQHVSQLRQRLLNSEKAIEQARVLLTEREQRLQNHQ 987
            AQ+ T+      DD        +D+Q ++QL Q   N E    QA+ L+T+  + L  HQ
Sbjct: 752  AQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQ 811

Query: 988  AQHNGNLLP-----EQLAEALTELQGQFAASEQRCAELRAEQAEDQRRQNANQALAQQIE 1042
             QH  + L      EQ+ + L +   +   +     E+R +  +D   +   Q L QQI 
Sbjct: 812  -QHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLLQQIA 870

Query: 1043 QAYIEYQRWARLDALIGSATGDRFRKLAQAYNLDLLVHHANAQLRQLVRRYRLKRGGS-M 1101
            Q   + + W  L++LIGS  GD+FRK AQ   LD LVH AN QL +L  RY L+R  S  
Sbjct: 871  QMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEA 930

Query: 1102 LGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASMASSTLKIESLFIDEGFGSLDP 1161
            L + V+DT   D +R   +LSGGE+FLVSLALAL L+ + S   +I+SLF+DEGFG+LD 
Sbjct: 931  LEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDS 990

Query: 1162 ESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQVRR-QGNGLSTVE 1211
            E+L  A+DALD L A G+ + VISHV+ M ERIPVQI+V++  G G S +E
Sbjct: 991  ETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLE 1041