Pairwise Alignments

Query, 322 a.a., ABC transporter for D-galactose/L-arabinose, permease component (from data) from Pseudomonas fluorescens FW300-N2E2

Subject, 328 a.a., L-arabinose ABC transporter permease AraH from Pectobacterium carotovorum WPP14

 Score =  374 bits (961), Expect = e-108
 Identities = 192/320 (60%), Positives = 240/320 (75%)

Query: 2   TIQNNALPTARKPLDLRRFLDDWVMLLAAIGIFVLCTLMIDNFLSPLNMRGLGLAISTTG 61
           T+ +      +  + L R  D++ ML+    +F+ C + + NF S +NM+GLGLAIS +G
Sbjct: 3   TVTSATSEKKKNGMGLSRIWDNYGMLVVFAVLFLGCAIFVPNFASFINMKGLGLAISMSG 62

Query: 62  IAACTMLYCLASGHFDLSVGSVIACAGVVAAVVMRDTNSVFLGISAALVMGLIVGLINGI 121
           + AC ML+CLASG FDLSV S+IACAGV  AVV+  + S+++G+SA L++G+  GL+NG 
Sbjct: 63  MVACGMLFCLASGDFDLSVASIIACAGVATAVVINISESLWIGVSAGLLLGVAFGLLNGF 122

Query: 122 VIAKLRVNALITTLATMQIVRGLAYIFANGKAVGVSQESFFVFGNGQMFGVPVPILITIV 181
           VIA+L++NALITTLATMQI RGLAYI ++GKAVG+  E FF  G     G+P PI ITI 
Sbjct: 123 VIARLKINALITTLATMQIARGLAYIISDGKAVGIEDERFFELGYANWLGLPAPIWITIG 182

Query: 182 CFLFFGWLLNYTTYGRNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGVIGALAGVILASR 241
           C + FG LLN TT+GRNT+AIGGN+EAA LAGV V RTKIIIFA+ G++ A AG+ILASR
Sbjct: 183 CMILFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFALSGLVSAAAGIILASR 242

Query: 242 MTSGQPMIGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFY 301
           MTSGQPM   G+EL VISACVLGGVSL GGIG I +V+AGVLIL  +ENAMNL NI  F 
Sbjct: 243 MTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGVLILGTVENAMNLLNISPFA 302

Query: 302 QYVIRGSILLLAVVIDRLKQ 321
           QYV+RG ILL AV+ DR KQ
Sbjct: 303 QYVVRGLILLAAVIFDRYKQ 322