Pairwise Alignments

Query, 304 a.a., Membrane protein, putative from Pseudomonas fluorescens FW300-N2E2

Subject, 305 a.a., conserved inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  350 bits (898), Expect = e-101
 Identities = 181/300 (60%), Positives = 227/300 (75%), Gaps = 4/300 (1%)

Query: 1   MAGSSLLVLIDDIATVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAERELPVVWA 60
           +AGSSLL L+DDIAT+LDD+++M K+AAKKTAGVLGDDL+LNAQQVSGVRA RELPVVW 
Sbjct: 3   LAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLNAQQVSGVRANRELPVVWG 62

Query: 61  VAKGSFINKLILVPSALAISAFVPWLVTPLLMVGGAYLCFEGFEKLAHKF-LHSPAEEQA 119
           VAKGS INK+ILVP AL ISAF+PW +TPLLM+GGA+LCFEG EK+ H        E+ A
Sbjct: 63  VAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCFEGVEKVLHMLEARKHKEDPA 122

Query: 120 EHAQLVEAVADPAVDLVAFEKDKIKGAVRTDFILSAEIIAITLGTVADAALTQQVIVLSG 179
           +  Q +E +A  A D + FEKDKIKGA+RTDFILSAEI+AITLG VA+A L  QV+VLSG
Sbjct: 123 QSQQRLEKLA--AQDPLKFEKDKIKGAIRTDFILSAEIVAITLGIVAEAPLLNQVLVLSG 180

Query: 180 IAIVMTIGVYGLVAGIVKLDDLGLWLTQKPGQAAKSIGGAILSAAPYMMKSLSVIGTAAM 239
           IA+V+T+GVYGLV  IVK+DDLG WL +K     +++G  +L  AP++MK+LS++GT AM
Sbjct: 181 IALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALGKGLLIIAPWLMKALSIVGTLAM 240

Query: 240 FLVGGGILTHGVPVVHHWIEGVTASAGG-AGFIVPMLLNAVAGIVAGAAVLAGVMVVGKV 298
           FLVGGGI+ HG+  +HH IE            I+P +LN + G + G  V+ GV  V K+
Sbjct: 241 FLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPTVLNLILGFIIGGIVVLGVKAVEKM 300