Pairwise Alignments

Query, 332 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N2E2

Subject, 352 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  137 bits (346), Expect = 3e-37
 Identities = 98/333 (29%), Positives = 153/333 (45%), Gaps = 8/333 (2%)

Query: 1   MRQRTIASHFARAALGGARRQGFDYVPVLQQLGISPELLDEPRARIAPEQFARLLQALWL 60
           M +RT ++ +A   +      G D   + +QLG+    L +P AR   +   RL Q    
Sbjct: 1   MSERTTSASWAMGIVKALEMDGLDCRALFKQLGLDYAALSDPDARFPQDSMTRLWQRAVE 60

Query: 61  ALGDEYLGFGRA-ASKPGTFAMMCHALIHCRTLGKALQRGLLFYSLFPDAPSLTLEAEGE 119
             G+  +G       +P +F +  +AL+   TL +   R + +  +  ++  L+     E
Sbjct: 61  LSGNPAIGLNMGKVVRPASFHVAGYALMSSNTLAEGFMRLVRYQRIIAESADLSFRLVPE 120

Query: 120 RVRLVLD-DSTLWDPDHFLTESLLVVWHRLASWLIGQRIGLEQATFGYTKPAHGAEYDLL 178
              L+L        P     E+ L     L  WL G+ +   +      +PA  A Y   
Sbjct: 121 GYALILTVHGDHLPPTRQSAEASLASALALCGWLTGRTLQPRKVVLQGEQPADLAPYKQA 180

Query: 179 FSCPLVFEARSSSLLFHSRYLGMPLLQDERTLKHFLERSPADLLSRPDDG---HSLSSQL 235
           F  PL F A   +L+F    +  PL      +    +R   + L+R  +    H     L
Sbjct: 181 FHAPLEFNAPYDALIFERADMDAPLPTANEAMALLHDRFAGEYLARFSESRVTHKARQVL 240

Query: 236 RRLLSRDTARWPDLDTVAGHLHISPQTLRRHLREEGTSFQELKDQLRRDIAIYHLGRADL 295
            RLL +     P  + VA  LH+S +TL+R L+EEGTSFQ L D  RR++A  +L +  +
Sbjct: 241 CRLLPQGE---PKREVVAQALHLSQRTLQRRLQEEGTSFQTLLDDTRRELAEQYLAQPSM 297

Query: 296 SLQQIAEQLGFSEPSAFHRAFKKWTGLTPGAYR 328
           +L +IA  LGF++PS F RAF++W   TPG YR
Sbjct: 298 TLLEIAYLLGFADPSNFFRAFRRWFDATPGEYR 330