Pairwise Alignments

Query, 441 a.a., Flagellar hook protein FlgE from Pseudomonas fluorescens FW300-N2E2

Subject, 582 a.a., Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  247 bits (630), Expect = 8e-70
 Identities = 141/319 (44%), Positives = 195/319 (61%), Gaps = 28/319 (8%)

Query: 1   MSFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFEDVYSATKLGSGSKTVGNGVR 60
           MSFN  +SG++AANK+L+V GNNIANV T GFKSSRA+F  +Y++ +LG+G   VG+GVR
Sbjct: 1   MSFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVR 60

Query: 61  LANVSQQFGQGD-VNNTGNVLDMGIQGQGFFVLSNDGSLSYTRAGTFKTDKEGFITNSDG 119
           LA+V Q F QG+ V ++GN LDM IQG GFFV+S+ GSL+YTRAG F  D   F+ +SDG
Sbjct: 61  LASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDG 120

Query: 120 TARLQGYGVDANGKIQNGILTDLRIDTSNLPPQATSLVSSTINLNSTATPIT--VAFNPT 177
             RLQGY  +  G+I +GI TDL+IDTSN+  +AT+ V+ TINL+++   +     F+P 
Sbjct: 121 -GRLQGYAANDKGEIASGIRTDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDPA 179

Query: 178 DTATFTKQFTTPVYD-----TQGNQHSMDQYMVKTAGNTWNVYTLIDGRNLNGSAPVAPN 232
           D ATFT+  T  + D          H + QY VKT  N W++Y L+DGRN     PV P+
Sbjct: 180 DPATFTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRN-----PVDPD 234

Query: 233 --APVPSTMTFDSNGRLTQVSTPVPPTVPPTVPTPAPTISNDLNLVGWVPGTVTNGTWTA 290
             AP+  ++    +G L+                 +     +  L GWVP T  NG W A
Sbjct: 235 SVAPLQVSLELKPDGSLSYSGND---------QHLSKVSDTEFALQGWVPATQINGAWAA 285

Query: 291 NGA---GSSTITISMANTT 306
           NG+   G+ ++ +S A  +
Sbjct: 286 NGSLNGGAVSLPLSDAGAS 304



 Score =  209 bits (532), Expect = 2e-58
 Identities = 138/365 (37%), Positives = 189/365 (51%), Gaps = 42/365 (11%)

Query: 92  LSNDGSLSYTRAGTFKTDKEGFITNSDGTARLQGY--------GVDANGKIQNGILTDLR 143
           L  DGSLSY+       + +     SD    LQG+           ANG +  G ++   
Sbjct: 245 LKPDGSLSYSG------NDQHLSKVSDTEFALQGWVPATQINGAWAANGSLNGGAVS--- 295

Query: 144 IDTSNLPPQATSLVSSTINLNSTATPITVAFNPTDTATFTKQFTTPVYDTQGNQHSMDQY 203
                L     SL+     +     P    FNP D  T+++ F   ++D+QGN H + QY
Sbjct: 296 ---LPLSDAGASLLDPGDTVMHRPVP---DFNPADLNTYSRMFGNQIFDSQGNTHELKQY 349

Query: 204 MVKTAGNTWNVYTLIDGRNLNGSAPVAPNAPVPSTMTFDSNGRLTQVSTPVPPTVPPTVP 263
            VK   N+W ++ LID RN   SA   P   + + + FDS+G +  ++           P
Sbjct: 350 FVKDGTNSWRMHVLIDDRNPQNSASTTP---LTANIVFDSHGTVASLTGS---------P 397

Query: 264 TPAPTISNDLNLVGWVPG-TVTNGT----WTANGAGSST--ITISMANTTQFNADTARSI 316
             + +  N L L GW P   V  GT    W ANGA  S   ITI   +  Q NA ++RS 
Sbjct: 398 GLSSSNGNQLKLTGWSPVMAVDPGTSRERWIANGAAGSADGITIDFTHLLQHNAASSRSA 457

Query: 317 PAQNGYATGQITNLTIDGSGVLLANFSNNQTKPIGQLALASFTNEQGLQPVGGTSWKETF 376
              +G++ G++ +L +   G+L A F+N  TK IGQ+ LASF N  GLQP   T W  T 
Sbjct: 458 AYVDGHSAGELKSLDVGRDGILRAGFTNGMTKDIGQVMLASFANPHGLQPRSDTRWTATA 517

Query: 377 ASGIPGYDAPETGTLGSIVSNSLEESNVNLTNELVELIKAQSNYQANAKTISTQSTIMQT 436
            SG+  YD P  GTLGSIVS +LE SNV L +EL+ LI+AQ+ YQAN+K IST+ T+MQT
Sbjct: 518 DSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQT 577

Query: 437 IIQMT 441
           +IQ T
Sbjct: 578 LIQST 582