Pairwise Alignments

Query, 240 a.a., Flagellar basal-body rod modification protein FlgD from Pseudomonas fluorescens FW300-N2E2

Subject, 229 a.a., Flagellar hook capping protein from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  226 bits (575), Expect = 4e-64
 Identities = 126/230 (54%), Positives = 156/230 (67%), Gaps = 6/230 (2%)

Query: 16  LANSSVKTNNTS----DTLGAVTGAATGKK-ELGKDAFLQLLVTQLKNQNPLEPQDNGEF 70
           +A  S   N+ S    +TL   T  AT     LGKD+FLQLLVTQ+KNQNPL+PQDN +F
Sbjct: 1   MAVDSTAANSVSSTFLNTLQNPTPTATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQF 60

Query: 71  VAQLAQFSSLEGITTLNETVSGIAGNYNSSQALQASSLVGRSVIAPGDKAVVDTSKSLNG 130
           VAQLAQFSSLE +  L  TV  IA +Y SSQALQASSLVGRSVI       VDT+K L G
Sbjct: 61  VAQLAQFSSLESMQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTSVDTTKGLTG 120

Query: 131 TVVVPTSVSSVAVKIVDKDGKTVRTIDLGSQNAGNSAFIWDGKNDAGTVVESGTYTFAAS 190
           ++VVP+  S   VK+ D     V ++DLG+Q AG ++F WDG + +GT + SGTY+F A 
Sbjct: 121 SIVVPSESSLTTVKVYDAQSNLVDSVDLGTQKAGTTSFAWDGTDSSGTQLPSGTYSFKAE 180

Query: 191 TTIDGKATSLITNLPATVSSVTISQTGGELMLNLAGLGSIALSKVQTIGM 240
            +++GK T   T LPATV+SVT+   G E  LNLA  GS+ALSKVQTIG+
Sbjct: 181 GSVEGKNTQFSTYLPATVNSVTLGVNGAETTLNLAS-GSVALSKVQTIGL 229