Pairwise Alignments

Query, 382 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

Subject, 365 a.a., efflux RND transporter periplasmic adaptor subunit from Pseudomonas sp. SVBP6

 Score =  208 bits (530), Expect = 2e-58
 Identities = 126/333 (37%), Positives = 191/333 (57%), Gaps = 12/333 (3%)

Query: 37  APKPPVSVAVAKAIEQPWQARLPTVGSLKALQGVDLSLEIAGTVQKVQFQSGQKVKAGQP 96
           AP+  V VA+      P       VG L+A + V +S EI G V ++ F SGQKV+ G  
Sbjct: 35  APRTLVKVALGTVQRGPANGFFAGVGELEAARQVLVSAEIGGRVTRINFVSGQKVRRGDV 94

Query: 97  LLQLDSEVESALLETAEADLGLAQLDFGRGRQLVGSQAISKGEFDRLSAQLKKNQATVNQ 156
           LL L+   E A     +A L  A+++  R R LV   A ++ + D   A        +  
Sbjct: 95  LLTLNDAPEQAERIRLQAQLHNARINHRRVRDLVAENAATQEQLDNALAARDMASGELAH 154

Query: 157 LKASLAKKQILAPFSGTIGIRQVDVGDYLASGTVIATLQDLSSLYVDFYVPEQTVPRLAV 216
            +A +A+K I APF G +GIR+V+ G YL  G  I +L D  +LYV+F + EQ    LA 
Sbjct: 155 TEAVIAQKTIRAPFDGVLGIRKVNQGQYLNVGDAIVSLIDTRTLYVNFSLDEQLSIHLAP 214

Query: 217 AQPVNVSVSAYPGQTFVGTISAINPKVEDSTRNVLVRATLANPDGKLLPGMFANLQVILP 276
            QPV+V + AYP ++F   ISAI+P + D +R V V+ATL N D  L  GM+A+++V  P
Sbjct: 215 GQPVDVLLDAYPERSFQARISAIDPLI-DRSRTVQVQATLDNADALLKAGMYASVKVADP 273

Query: 277 DVAAGIVVPESAVTYTLYGNSMYVVAQKKAADGTVEKDDKGQPVLIAERRFVETGERRDG 336
            VA  + +PE+AVTYT YG+++++            + D+ Q  L+ +R  V+ GER+DG
Sbjct: 274 QVAEVLSLPETAVTYTAYGDTVFLA-----------RHDEQQQALVVQRVPVKIGERQDG 322

Query: 337 QVLVTKGVQSGDQVVIAGQIKLDNGTPIAVSDD 369
           +V++ +G++  DQVV +GQ+KL +G  +  ++D
Sbjct: 323 RVIILEGLREADQVVTSGQLKLSDGVAVEATED 355



 Score = 31.2 bits (69), Expect = 5e-05
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 23  YKAFSIYQQIQMFSAPKPPVSVAVAKAIEQPWQARL----PTVGSLKALQGVDLSLEIAG 78
           Y  FS+ +Q+ +  AP  PV V +    E+ +QAR+    P +   + +Q V  +L+ A 
Sbjct: 199 YVNFSLDEQLSIHLAPGQPVDVLLDAYPERSFQARISAIDPLIDRSRTVQ-VQATLDNAD 257

Query: 79  TVQKVQFQSGQKVKAGQPLLQLDSEVESALLETAEAD 115
            + K    +  KV A   + ++ S  E+A+  TA  D
Sbjct: 258 ALLKAGMYASVKV-ADPQVAEVLSLPETAVTYTAYGD 293