Pairwise Alignments

Query, 417 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 420 a.a., porin from Pseudomonas simiae WCS417

 Score =  211 bits (538), Expect = 3e-59
 Identities = 136/402 (33%), Positives = 206/402 (51%), Gaps = 22/402 (5%)

Query: 28  ESKGFIEDQSLTVLTRALYMNRDFKNNPSTSQSYREESGVAARAIYESGFTQGTVGVGVD 87
           ++ GFIED   T+  R  Y NR+F  NP+  Q   EE         +SG+T GTVG G+D
Sbjct: 29  QADGFIEDAKATLNLRNAYFNRNF-TNPTNPQGKAEEWTQNFILDAKSGYTTGTVGFGID 87

Query: 88  GFAFGTVRIDGGSGRAGNGLFARDSDGNLEDTQSKVGGAVKFRLSDTVLKYGNQFTTSPV 147
                + ++DGG G  G  L    SDG   D   ++G A+K +LS T LK G      P+
Sbjct: 88  VLGLYSQKLDGGKGTGGTQLLPIHSDGRPADNFGRLGVALKTKLSKTELKVGEWMPVLPI 147

Query: 148 FSTDDSRLLPEVATGTLITSKEIKGLELSAGHF--NAISSQTGMGDDGLGLKSA------ 199
             +DD R LP+   G  +TS EI GL L  G F  N+  +   M D  +  K+A      
Sbjct: 148 LRSDDGRSLPQTFRGGQVTSNEIAGLTLYGGQFRGNSPRNDASMEDMFMNGKAAFTSDRF 207

Query: 200 DIVGATYQFTDNFV-AGVAASDVEDHYKKKYINLNYTLPINEDQSLNFDFNGYDSQDQGQ 258
           +  G  Y F D     GV  +++ D Y+++Y NL ++ P+  D +L  +   +  ++ G 
Sbjct: 208 NFGGGEYSFNDKRTQVGVWYAELSDIYQQQYFNLTHSQPVG-DWTLGANLGFFTGKEDGS 266

Query: 259 KLSGDVDNRIWSLAAAYAIGAHKFTLAHQRSSGDTGY--VYGVDGGGTIFLANSIQYSDF 316
            L+GD+DN+      +     + F +  Q+ +GD+ +  V G  GG    LAN    + +
Sbjct: 267 ALAGDLDNKTAFALLSAKYNGNTFYVGLQKLTGDSVWMRVNGTSGG---TLANDSYNASY 323

Query: 317 NGQDERSWQARYDLNMKTYGVPGLSFMTRYVTGDNIETGG-AEGKEHEWDFETKYVMQSG 375
           +   E+SWQ R+D N    G+PGL+ M RY++G N+ TG   +GKE   + E  Y +QSG
Sbjct: 324 DNAKEKSWQVRHDFNFVVLGIPGLTLMNRYISGSNVHTGAITDGKEWGRESELAYTVQSG 383

Query: 376 PAKDLSFRVRAAFYRANSDYNAINGNDNNDTRLIIEYPLSIL 417
             KDL+ R R +  R +      + N+ ++ RL I YP+S+L
Sbjct: 384 ALKDLNVRWRNSTMRRD-----FSNNEFDENRLFISYPISLL 420