Pairwise Alignments

Query, 417 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  278 bits (710), Expect = 3e-79
 Identities = 180/445 (40%), Positives = 242/445 (54%), Gaps = 48/445 (10%)

Query: 11  LAVSASTSQFAMASSQEESKGFIEDQSLTVLTRALYMNRDFKN------NPS--TSQSYR 62
           LA++   SQ  + ++++ + GF+E  +L+VL R  Y NRD ++      NPS      Y 
Sbjct: 13  LALAGVGSQ--VVAAEKSADGFMEGSTLSVLNRNFYFNRDNRDSVAPTHNPSKQADNGYS 70

Query: 63  EESGVAARAIYESGFTQGTVGVGVDGFAFGTVRIDGGSGRAGN----GLFARDSDGNLED 118
           E  G A    +ESGFTQGTVGVG+D FA   +++D G GR G      +   D DG   D
Sbjct: 71  EAWGHAVITRFESGFTQGTVGVGLDAFAMLGLKLDTGGGRNGGRSSFDVLPVDRDGQARD 130

Query: 119 TQSKVGGAVKFRLSDTVLKYGNQFTTSPVFSTDDSRLLPEVATGTLITSKEIKGLELSAG 178
             +KVGGA K RL DTVLK G+ F  +PV +  DSRLLPE   G  + +  IK L L AG
Sbjct: 131 EYTKVGGAAKLRLFDTVLKVGDVFPANPVVAAGDSRLLPESFRGVTLENSSIKDLTLQAG 190

Query: 179 HFNAISSQTGMGDD---------GLGLKSADIV--GATYQFTDNFVAGVAASDVEDHYKK 227
             +A+S    M  D         G  + S  I   G  Y+  ++    + +S ++D + +
Sbjct: 191 RLHAMSQP--MSSDLRENFVTFYGGPVDSPWIAYGGGDYRLNEHVSVSLFSSRLKDAWNQ 248

Query: 228 KYINLNYTLPINEDQSLNFDFNGYDSQDQGQKLSGDVDNRIWSLAAAYAIGAHKFTLAHQ 287
            Y   + + P++E  +L   FN Y + D+GQ+  G  DN IWS       GAH   L HQ
Sbjct: 249 YYAGTSLSWPLSEALALIGGFNYYKAVDEGQQRLGAFDNDIWSAKLGVRFGAHTLALTHQ 308

Query: 288 RSSGDTGYVYGVDGGGTIFLANSIQYSDFNGQDERSWQARYDLNMKTYGVPGLSFMTRYV 347
           R++GD  + Y +    +IFL NSIQYSDFN   ERSW  RYDLNM  YGVPGLSFMTRY 
Sbjct: 309 RNNGDDDFDY-LRQSDSIFLDNSIQYSDFNAPKERSWMLRYDLNMAAYGVPGLSFMTRYG 367

Query: 348 TGDNIETGGA---------------EGKEHEWDFETKYVMQSGPAKDLSFRVRAAFYRAN 392
            G++ +   A               + K  E D E KYV+Q+G AKDLS RVR A  RA 
Sbjct: 368 KGNDADYSNANATYMRRDVAGNPLTDQKRWERDIEVKYVVQTGAAKDLSLRVRQATTRAT 427

Query: 393 SDYNAINGNDNNDTRLIIEYPLSIL 417
           +       +D ++ R+I+EYPLSIL
Sbjct: 428 A-----FESDLDEVRMIVEYPLSIL 447