Pairwise Alignments

Query, 417 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  228 bits (582), Expect = 2e-64
 Identities = 148/443 (33%), Positives = 231/443 (52%), Gaps = 36/443 (8%)

Query: 5   KWSMIALAVSASTSQFAMASSQEESKGFIEDQSLTVLTRALYMNRDFKNNPSTSQSYREE 64
           +++ + +A++A T  FA  + ++++ GFIE  S  +  R  Y NRD   N +       E
Sbjct: 6   RFTPLFIALTA-TIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRD---NHNAGVRDTRE 61

Query: 65  SGVAARAIYESGFTQGTVGVGVDGFAFGTVRIDGGSGRAGNGLFARD--SDGNL---EDT 119
            G  A A +ESG+T G VG G+D  A   +++DGG G AG  +       DG L     +
Sbjct: 62  WGQGAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHAGTSILPEHIKDDGELGAAPHS 121

Query: 120 QSKVGGAVKFRLSDTVLKYGNQFTTSPVFSTDDSRLLPEVATGTLITSKEIKGLELSAGH 179
            S  G AVK +  DT LK G+ F T+PV +  ++R+LP+   G  +T+  I GL L  G 
Sbjct: 122 FSTAGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEGGQ 181

Query: 180 FN-----------AISSQTGMGDDGLGLKSADIVGATYQFTDNFVAGVAASDVEDHYKKK 228
            +            I +  G  D+    K  +  GA++  T++  A + A++++D + + 
Sbjct: 182 VSFTHPYNQSGHRRIDTYYGSLDEHDKSKHLNWAGASWSGTEHITANLYAAELKDIWNQY 241

Query: 229 YINLNYTLPINEDQSLNFDFNGYDSQDQGQKLSGDVDNRIWSLAAAYAIGAHKFTLAHQR 288
           Y + +YT  +N+  SLN   + Y +QD GQ L G +DN  +S+      G H  T A+QR
Sbjct: 242 YADFDYTYVVNDLVSLNPGVHFYHTQDTGQALLGKIDNNTYSVHFTVNAGFHSVTAAYQR 301

Query: 289 SSGDTGYVYGVDGGGTIFLANSIQYSDFNGQDERSWQARYDLNMKTYGVPGLSFMTRYVT 348
            +G+T + Y ++ G +++L NS  YSDFN  +ERSW+ +Y  +    GVPGLS    Y  
Sbjct: 302 VNGNTPFDY-INLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLSTSLSYSR 360

Query: 349 GDNIETGGAEGKEH--------------EWDFETKYVMQSGPAKDLSFRVRAAFYRANSD 394
           G+   T   +   H              E D + KYV Q G  KDLS  VR A +R +  
Sbjct: 361 GEADLTKATQDTTHYDYYREDGKNAMHWERDLDVKYVFQEGDLKDLSVLVRYATHRGSQG 420

Query: 395 YNAINGN-DNNDTRLIIEYPLSI 416
           Y +I+ N DN++ R+I++YPL++
Sbjct: 421 YASIDSNSDNDELRVIVDYPLNV 443