Pairwise Alignments

Query, 417 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  377 bits (967), Expect = e-109
 Identities = 222/443 (50%), Positives = 273/443 (61%), Gaps = 44/443 (9%)

Query: 7   SMIALAVSASTSQFAMASSQEESKGFIEDQSLTVLTRALYMNRDFKNNPSTSQSYREESG 66
           S++ALA+ A+T   A A+ Q +SKGFIED    VL R  Y+NRD K+        + E G
Sbjct: 7   SLVALAMIAATQ--AQANDQADSKGFIEDSHANVLLRNAYINRDKKHGTDD----QIEWG 60

Query: 67  VAARAIYESGFTQGTVGVGVDGFAFGTVRIDGGSGRAGNG---LFARDSDGNLEDTQS-- 121
            A  A + SGFTQGTVGVGVD F    VR+DGG G  G G    F      N E   S  
Sbjct: 61  QAFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSP 120

Query: 122 ----KVGGAVKFRLSDTVLKYGNQFTTSPVFSTDDSRLLPEVATGTLITSKEIKGLELSA 177
               + G AVKFR+S+TVLKYG+Q    PV   DD+RLLPE  TGTLITSKEI+GLEL+A
Sbjct: 121 HNLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNA 180

Query: 178 GHFNAISSQTGMGDDGLGLKSADIVGATYQFTDNFVAGVAASDVEDHYKKKYINLNYTLP 237
           G F   + ++    DG GLKS +++G +Y+FTDNF A +  +D ED  KK Y+ LNY  P
Sbjct: 181 GRFTQEARKSAERRDGGGLKSINVLGGSYKFTDNFTASLYTADNEDVMKKHYLGLNYVFP 240

Query: 238 INEDQSLNFDFNGYDSQDQGQ-----KLSGDVDNRIWSLAAAYAIGAHKFTLAHQRSSGD 292
           I  DQSL  DFNGY S    +      L+GD  N IWSLAA YA GAH FTLAHQRS+G 
Sbjct: 241 IASDQSLTLDFNGYKSDINNKYVKAAGLNGD-SNTIWSLAATYAYGAHSFTLAHQRSTGS 299

Query: 293 TGYVYGV--------DGGGTIFLANSIQYSDFNGQDERSWQARYDLNMKTYGVPGLSFMT 344
           TGY YG         DGG TI+LANS  +SDFN +DERSWQ  Y L+   YG+PGL++  
Sbjct: 300 TGYNYGFYQNAGGVGDGGSTIYLANS-YWSDFNAEDERSWQLGYGLDFGAYGIPGLTYKL 358

Query: 345 RYVTGDNIET-------GGAEGKEHEWDFETKYVMQSGPAKDLSFRVRAAFYRANSDYNA 397
            YV GDNI T       G  EGKE E   + +YV+Q GPAKDLS ++R++F R N   NA
Sbjct: 359 AYVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLRSSFLRTN---NA 415

Query: 398 INGN----DNNDTRLIIEYPLSI 416
           +  N    D N+ R+ +EYP+SI
Sbjct: 416 VQQNGYNDDGNEVRVFVEYPISI 438