Pairwise Alignments

Query, 417 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 430 a.a., OprD family porin from Pseudomonas fluorescens SBW25

 Score =  246 bits (628), Expect = 9e-70
 Identities = 152/430 (35%), Positives = 226/430 (52%), Gaps = 26/430 (6%)

Query: 1   MRVMKWSMIALAVSASTSQFAMASSQEESKGFIEDQSLTVLTRALYMNRDFKNNPSTSQS 60
           +R  + +  ALA +A+ + F+  S       F ED S T+ TR +Y NRDF++  S  QS
Sbjct: 12  VRSSRLTQTALASAATLAGFSPLSQA----AFFEDSSATLETRNMYFNRDFRDGTSAQQS 67

Query: 61  YREESGVAARAIYESGFTQGTVGVGVDGFAFGTVRIDGGSGRAGNGLFARDSDGNLEDTQ 120
            R+E         +SG+T GTVG GVD      V++D    R G GL     DG   D  
Sbjct: 68  KRDEWAQGFMLNLQSGYTDGTVGFGVDALGMLGVKLDSSPDRTGTGLLPTHDDGRAADEY 127

Query: 121 SKVGGAVKFRLSDTVLKYGNQFTTSPVFSTDDSRLLPEVATGTLITSKEIKGLELSAGHF 180
           SK+G   K ++S T LK G+     P+   +D R+LP+   G LITSKE K L  +AG  
Sbjct: 128 SKLGLTGKVKISATELKIGSLIPELPILKPNDGRILPQTFNGGLITSKEFKNLVFTAGRL 187

Query: 181 N-------------AISSQTGMGDDGLGLKSADIVGATYQFTDNFVAGVAASDVEDHYKK 227
           +             A++++      G   K  +  GA Y+F D        + ++D Y++
Sbjct: 188 DKAKDRDDSNYEDIALNNKNSRFLSGATGKHFNFGGADYKFADKITGSYHFAQLDDVYRQ 247

Query: 228 KYINLNYTLPINEDQSLNFDFNGYDSQDQGQKLSGDVDNRIWSLAAAYAIGAHKFTLAHQ 287
            ++ L    P+    +   D     S D G    G +DN   +   +YA+  HK +  +Q
Sbjct: 248 HFLGLVAARPMGPG-TFGTDLRLAISDDTGSARGGKIDNTALNGLFSYALNGHKLSAGYQ 306

Query: 288 RSSGDTGYVYGVDGGGTIFLANSIQYSDFNGQDERSWQARYDLNMKTYGVPGLSFMTRYV 347
             SGD+ + Y VDG    +L N +Q +DF G +ERSWQARYD +    G+PGLSFM+RY+
Sbjct: 307 HMSGDSAFPY-VDGSDP-YLVNFVQINDFAGAEERSWQARYDYDFAKLGIPGLSFMSRYL 364

Query: 348 TGDNIE-TGGAEGKEHEWDFETKYVMQSGPAKDLSFRVRAAFYRANSDYNAINGNDNNDT 406
           +GDNI+   G  GKE E + E KYV+Q+G  KD++ R+R A YR+N  Y+A    D ++ 
Sbjct: 365 SGDNIKLKNGETGKEWERNSEIKYVVQTGTFKDVAVRLRNATYRSN--YSA---RDADEM 419

Query: 407 RLIIEYPLSI 416
           RL++ Y +++
Sbjct: 420 RLLVSYSVAL 429