Pairwise Alignments

Query, 288 a.a., ABC spermidine/putrescine transporter, inner membrane subunit from Pseudomonas fluorescens FW300-N2E2

Subject, 281 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  179 bits (454), Expect = 6e-50
 Identities = 98/272 (36%), Positives = 165/272 (60%), Gaps = 8/272 (2%)

Query: 15  LFLSPSMLFLGVLIAASLLVLRMSVGTKGAEWSGFSLASYEQLL-EPYYLKSLLLTLRLA 73
           LF    +L LG+ +  S  V    VG K  EW+    A Y  LL + Y+ +    T  ++
Sbjct: 14  LFAGLLILPLGLTLVLSFNVFDYQVGVKADEWT---FAHYLSLLSDSYFYEIFWRTFWIS 70

Query: 74  LISAVIAVLLAIPVAYTMSRLASPLLRRVFLAAVLLPLLVNLLLQSYGWLVILGPAGMLN 133
            +  ++ VL+ +P AY +SR+ +P  R +FL  +L PLL++++++++GW ++LG  G++N
Sbjct: 71  ALVTLLCVLIGVPEAYILSRMGTPW-RSIFLILILTPLLISVVVRAFGWSLLLGADGLVN 129

Query: 134 QALMGLGLIKRPIMLLYNQNGVLMGLVQTAFPLAVLPIASAMRGVARSYEEAAATLGASR 193
           Q +  LG   RP+ LLY    V++ LV    P  ++P+ ++++ +  S E+AA +LGAS+
Sbjct: 130 QVIQFLG--GRPVKLLYTPFAVIIALVHVMLPFMIIPVWTSLQKLDPSAEQAALSLGASQ 187

Query: 194 FQVFRQVVLPMSLPGIITGATLVFAYNASSFVVPLLLGGRRVPMLAVMVHDQIAPLMNWP 253
             V R++VLP  +PG+++G  +VF   ASSF +P LLGGRR+ M+A +V+DQ    +NWP
Sbjct: 188 ATVMRKIVLPQVMPGVLSGTLIVFGLAASSFAIPGLLGGRRLKMVATVVYDQYLSELNWP 247

Query: 254 AASAAGVVLIVTTLMIM-TLSEYFTGRRRRML 284
             +   VVL++  L+IM + +    GR ++ L
Sbjct: 248 MGATIAVVLLLVNLLIMLSWNRMVEGRYKKSL 279