Pairwise Alignments

Query, 162 a.a., FIG006045: Sigma factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

Subject, 173 a.a., KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) from Escherichia coli BW25113

 Score =  159 bits (402), Expect = 2e-44
 Identities = 80/153 (52%), Positives = 107/153 (69%)

Query: 6   TVEVLYNAHHSWLNSWLRRKLGCPDSAADLTQDTFMRVLTTRDPQPILEPRAFLTTIAKR 65
           T E LY  HH WL SWL RKL     A D+ QDTF+RV+ +     I +PR+FL TIAKR
Sbjct: 12  TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71

Query: 66  VLFNHYRRQDLERAYLDTLAQLPEQVAPSEEERAIILQTLTELDQLLDGLPRAVKQAFLL 125
           V+ + +RR  LE+AYL+ LA +PE  APS EER   L+TL  LD +LDGL    ++AFLL
Sbjct: 72  VMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLL 131

Query: 126 AQVDGLTYNEIARELGISLATVKRHLNKAAMRC 158
           +Q+DGLTY+EIA +LG+S+++VK+++ KA   C
Sbjct: 132 SQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164