Pairwise Alignments

Query, 671 a.a., Excinuclease ABC subunit B from Pseudomonas fluorescens FW300-N2E2

Subject, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

 Score =  779 bits (2012), Expect = 0.0
 Identities = 403/659 (61%), Positives = 494/659 (74%), Gaps = 5/659 (0%)

Query: 8   TRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQIQRPTLVLAPNKT 67
           + +QPAGDQP AI  +VEGI +G   Q LLGVTGSGKTF++A VI   QRP ++LAPNKT
Sbjct: 175 SEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKT 234

Query: 68  LAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRLSATK 127
           LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP SDTFIEK++SIN+ I++MR SAT+
Sbjct: 235 LAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 294

Query: 128 ALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRNDMDF 187
           +LLER D IIV +VSCIYG+GS ETY  M   +  GD+LDQR LL  L   QY R DMDF
Sbjct: 295 SLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDF 354

Query: 188 ARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFYPKSH 247
            R +FRVRGD I+I+PA  +  A RI +F DE++S++ FDPLTG+    L     Y  SH
Sbjct: 355 QRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLQSVKIYANSH 414

Query: 248 YVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCNGIEN 307
           YVTPR TL  AI+ IK EL+ RL  L    +L+EAQRLEQRTR+D+EM+   G C GIEN
Sbjct: 415 YVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIEN 474

Query: 308 YSRYLSGRPAGAPPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEYGFRL 367
           YSRYL+GR  G PPPTL++Y+P +ALL IDESHVSV Q+G MY+GD  RK TL EYGFRL
Sbjct: 475 YSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRL 534

Query: 368 PSALDNRPMRFDEWESVSPQTIFVSATPGNYEAEHAGRV-VEQVVRPTGLVDPQVEVRPA 426
           PS +DNRP+RF+EW+++ P T+ VSATPG++E E +G V  EQV+RPTGL+DP VEVR A
Sbjct: 535 PSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFAEQVIRPTGLIDPPVEVRSA 594

Query: 427 LTQVDDLLSEISKRVALEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTVERVEI 486
            +QVDD+L EI +  A   R L T LTKRMAEDLT+YL + GVRVRY+HSDIDT+ER+EI
Sbjct: 595 RSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEI 654

Query: 487 IRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNG 546
           IRDLRLG FDVLVGINLLREGLD+PE   VAILDADKEGFLRSE SLIQTIGRAARN++G
Sbjct: 655 IRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDG 714

Query: 547 RAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGATVPGSRSK 606
           + ILYAD ITGSM+RA+ ET RRR+KQ+A+N  +GITP+ V   ++DI++       R  
Sbjct: 715 KVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVY---ERDH 771

Query: 607 KRKGMAKAAEESARYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQLRDEIGKLR 665
            R  ++  + +       L   + +   +  LE+ M   A DL+FE AA+LRDEI +L+
Sbjct: 772 VRADISGVSGKGFADGGHLVG-NNLQAHLNALEKSMRDAAADLDFEKAARLRDEIKRLK 829