Pairwise Alignments

Query, 652 a.a., DNA primase (EC 2.7.7.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 666 a.a., DNA primase (EC 2.7.7.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  407 bits (1047), Expect = e-118
 Identities = 241/565 (42%), Positives = 330/565 (58%), Gaps = 41/565 (7%)

Query: 5   IPQSFIDDLLNRTDIVDVVSSRLQMKKAGKNYTACCPFHKEKTPSFSVSPDKQFYYCFGC 64
           IPQ+FI +LLNR D+VDVV   +Q+KK G N    CPFH EK+PSFSVSP KQFY+CFGC
Sbjct: 3   IPQTFIQELLNRVDVVDVVGRYVQLKKGGANLMGLCPFHGEKSPSFSVSPTKQFYHCFGC 62

Query: 65  GAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRQHKPR----QPTDSPLYPLL 120
           GA GNA+GF+M+H  + F +AV++LA+ AGM+IP +++  Q + R    +   + L  +L
Sbjct: 63  GANGNAIGFLMEHAGMSFIEAVKDLAQQAGMQIPEDDASPQDRERAAQQRQKQATLNDVL 122

Query: 121 TAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQQ 180
             AA  Y + LK+ P    A+DYLKGRGL+G+IA+ FGLG+AP GW  L         Q+
Sbjct: 123 EKAAHAYAKQLKTSPR---AIDYLKGRGLSGQIAKTFGLGYAPEGWRALASVFPD--YQE 177

Query: 181 RAMIDAGLLIENAET------GKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGDDKPKYLN 234
             ++++G++IE+ +        KRYDRFRDR+MFPIR+ +G  I FGGRVL   +PKYLN
Sbjct: 178 PLLVESGMVIEHEDEKGADGQAKRYDRFRDRIMFPIRNVKGEHIGFGGRVLDKGEPKYLN 237

Query: 235 SPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEE 294
           SPETPVF KG+ELYGL+EAR   R     +V EGYMDV+ALAQ G  NAVATLGTA + +
Sbjct: 238 SPETPVFSKGRELYGLFEARTAIRVAGYALVTEGYMDVVALAQLGFANAVATLGTACTPD 297

Query: 295 HMKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDPDTLVRS 354
           H+++L R   +V+F FDGD AGR AA +AL+A LP   D R  +FLFLP   DPD+ +R+
Sbjct: 298 HVQKLLRFTDSVVFSFDGDGAGRRAARKALDAALPLATDTRSVKFLFLPAEHDPDSFIRA 357

Query: 355 EGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGANLRTLM 414
            G  AF A+  + A PL+ +  +    + D  S EG+A MA+ A PL   +P   L+  +
Sbjct: 358 NGEAAF-AQCVKEAVPLSRFLLESAGADCDLTSAEGRARMASQARPLWSALPDGALKRQL 416

Query: 415 RQRLSEITGLNSEAVNQLVHS------------APQEAPPAYDPGIDYD----AMPDFAD 458
              L+   G+ S  + QL               +P  AP  +D G  YD    A   +  
Sbjct: 417 LGELATGIGIGSPDLLQLWQQSGGNGPRKPRAPSPAPAPQGHDDGY-YDGGGGASASYVP 475

Query: 459 YHQPQQDYAPQQEWTPKKTGSGGKKWDKKPWDKNGKRGDRDQPRAPRVPAAVEPPTLAAL 518
            H PQ+             G  GK +  K + K  ++G    PR      A       A+
Sbjct: 476 DH-PQESGGGYGGGGYSSGGGSGKSYGGKGYGK-WRKGPPPPPRMLGTRRAGGSRADRAV 533

Query: 519 RTLLHHPQLAEKVEDAGHFAAEDHS 543
             LL +P   +      + +A+DH+
Sbjct: 534 GLLLANPHAWD------NLSADDHA 552