Pairwise Alignments

Query, 392 a.a., ABC transporter for Carnitine, ATPase component (from data) from Pseudomonas fluorescens FW300-N2E2

Subject, 400 a.a., glycine betaine transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  284 bits (726), Expect = 4e-81
 Identities = 170/388 (43%), Positives = 245/388 (63%), Gaps = 21/388 (5%)

Query: 12  IFSNRPKAALDLLDKGLSRPEILQQTGLIVGVEKASLSIEKGEICVLMGLSGSGKSSLLR 71
           IF   P+ A   +++GLS+ +IL++TGL +GV+ ASL+IE+GEI V+MGLSGSGKS+++R
Sbjct: 13  IFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVR 72

Query: 72  CINGLNTVSRGKLFVEHEGRQIDIASCSPAELKMMRTKRIAMVFQKFALMPWLTVRENIS 131
            +N L   +RG++ ++     +DIA  S AEL+ +R K+IAMVFQ FALMP +TV +N +
Sbjct: 73  LLNRLIEPTRGQVLIDG----VDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTA 128

Query: 132 FGLEMQGRPEKERRKLVDEKLELVGLTQWRNKKPDELSGGMQQRVGLARALAMDADILLM 191
           FG+E+ G   +ERR+   + L  VGL  + +  PDELSGGM+QRVGLARALA++ DILLM
Sbjct: 129 FGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLM 188

Query: 192 DEPFSALDPLIRQGLQDELLELQRKLQKTIVFVSHDLDEALKLGTRIAIMKDGKIIQYSK 251
           DE FSALDPLIR  +QDEL++LQ K Q+TIVF+SHDLDEA+++G RIAIM++G+++Q   
Sbjct: 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248

Query: 252 PEEIVLNPADDYVRTFVAHTNPLNVLCGRSLMRTLDN--CKRING-------SVCLDPGG 302
           P+EI+ NPA+DYVRTF    +   V   + + R   N   ++  G        +  D   
Sbjct: 249 PDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDR 308

Query: 303 DSWLDLAEGNTIKGARQNGA---ALDLQNWVPGQAVEDLGRRPTLVDSNIGMRDALQIRY 359
           +    +  GN   GA    +   AL  Q  +    ++     P  VD+   + + L    
Sbjct: 309 EYGYVIERGNKFVGAVSIDSLKTALTQQQGLDAALID----APLAVDAQTPLSELLSHVG 364

Query: 360 QTGNKL-VLHDNQQVVGILGDSELYHAL 386
           Q    + V+ ++QQ VGI+    L  AL
Sbjct: 365 QAPCAVPVVDEDQQYVGIISKGMLLRAL 392