Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 570 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  416 bits (1070), Expect = e-120
 Identities = 243/537 (45%), Positives = 323/537 (60%), Gaps = 43/537 (8%)

Query: 2   SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           SF+SLGL+E +V A+  A +  PTP+Q  AIP VL GRDL+  AQTGTGKT  FALPIL+
Sbjct: 27  SFSSLGLAEPIVRALTEANHVTPTPIQAEAIPQVLAGRDLIGIAQTGTGKTAAFALPILD 86

Query: 62  RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNP 121
           RL    HP   +R  P+  R LVL+PTREL+ Q+ ++F+ + R  +       GGV M  
Sbjct: 87  RLVR--HP---RRPDPKSVRALVLSPTRELSGQIVDNFEKFGRHARISVTLAIGGVPMGR 141

Query: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           Q++A++RGVDVLVA PGRL+DL    +V L  VE+LVLDEAD+MLDMGFVH ++ ++ RL
Sbjct: 142 QIRALARGVDVLVATPGRLMDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRL 201

Query: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLA 241
           P KR +L FSAT    I +LAG +LH+P R+ VTP   T +R+EQRV  +   +K  LLA
Sbjct: 202 PHKRHSLFFSATMPPAIAELAGGMLHDPVRVAVTPVAKTADRVEQRVIHVDKPNKGQLLA 261

Query: 242 HLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVR 301
            +++    ++ LVF RTKHGA+++   L K G+ A AIHGNKSQN R + L  F+ G++R
Sbjct: 262 EVLSTEEIDRALVFARTKHGADKVVRVLAKCGIAAEAIHGNKSQNQRDRVLLAFREGKIR 321

Query: 302 ILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361
            L+ATDIAARG+D+  + HV+N++LPNV E YVHRIGRT RAGR G AIS    +E   L
Sbjct: 322 TLIATDIAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAYL 381

Query: 362 KSIERMTKQKIADGDLMGF-------DASTIE-AEKPEVRE----------RPDVRNPRN 403
           KSIER+ K +I   D  G        DA  IE  E+ E  E          RP  R P+ 
Sbjct: 382 KSIERLIKLQIPATDRRGAGMRFAIPDAPPIELEERDETAERNDFIGGRGGRPGQRGPQR 441

Query: 404 ARGPRGDGPNGSGGGGGRKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPA 463
           +RGPR +G  G G G G++ +G+++ +         RGERPA E +P      R ++ P 
Sbjct: 442 SRGPRPEGREG-GRGQGQRAEGREQREP--------RGERPAGEGRPARAAQPRPERAPE 492

Query: 464 PRAAADRAPDEFLDDDIDNFGNRVDYVPQQKPAQGRGRRPGAPAQGAAAGAPRSGQP 520
               A  A          N   R D   Q +  +GRG RP    +G   G  R  +P
Sbjct: 493 GHRNAQGA---------GNGAGRRD--GQNRSGEGRGARPQGEGRGGERGGDRGARP 538