Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score = 1141 bits (2952), Expect = 0.0
 Identities = 580/629 (92%), Positives = 598/629 (95%), Gaps = 10/629 (1%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSFASLGLSEALV AIEAAGYT+PTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVH+SFK+YARDLKFVSACIFGGVGMN
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQVQAMSRGVDVLVACPGRLLDL GQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           LPAKRQNLLFSATFS+DIT LAGKLLHNPERIEVTPPNTTVERIEQRVFRL ASHKRALL
Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
           AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGL AVAIHGNKSQNARTKALADFKAG V
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSGGGGG 420
           LKSIERMTKQKIADGDLMGFDAS +EAEKPE RERPDVRNPRN RGP+GDGPNG GGGGG
Sbjct: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG 420

Query: 421 RKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPA--PRAAADRAPDEFLDD 478
           R+DKGKDKGKEKSAS   GRGERPAREQKPREGTPAREQ++P+  PRAAADRAPDEFLDD
Sbjct: 421 RRDKGKDKGKEKSAS---GRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDD 477

Query: 479 DIDNFGNRVDYVPQQKPAQGRGRRPGAPAQGAAAGAPRSGQPQ-GRQNGPRNSNGSSTGT 537
           D+DNFGNRVDYVPQ KPAQGRGRRPGAPAQGA AGAPR GQPQ GRQNGPRNS+G +TGT
Sbjct: 478 DVDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGAPRGGQPQGGRQNGPRNSSGGTTGT 537

Query: 538 PPAKRSGPRNGAPRDGQARRDDTRP--RRPAREDQPR-QEPAVQNPRSN-QPKIMHKESK 593
           PPAKR+GPRNGAPRDGQARR+D+R   RRPAR+DQ R  EPAVQNPR    PKI+HKESK
Sbjct: 538 PPAKRNGPRNGAPRDGQARREDSRSNNRRPARDDQQRSSEPAVQNPRGGPAPKIIHKESK 597

Query: 594 ADRFPTPEQLDQLPSRPRGEKPALLTRNR 622
           ADRFPTPEQLDQLP RPRGEKPALLTRNR
Sbjct: 598 ADRFPTPEQLDQLPGRPRGEKPALLTRNR 626